Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25667 | 3' | -52.7 | NC_005337.1 | + | 14826 | 0.68 | 0.9138 |
Target: 5'- gGACGcCGUGGugGGCGUcCUUUCCGc -3' miRNA: 3'- gUUGUaGCACUugUCGCGcGAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 86261 | 0.68 | 0.907576 |
Target: 5'- ----uUCGUGcuccGCAGCGCGCggaUCCAg -3' miRNA: 3'- guuguAGCACu---UGUCGCGCGag-AGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 4496 | 0.72 | 0.747511 |
Target: 5'- cCAGCA-CGUGcAGCGGCGUGUUC-CCGa -3' miRNA: 3'- -GUUGUaGCAC-UUGUCGCGCGAGaGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 68670 | 0.77 | 0.458595 |
Target: 5'- gAGCG-CGUGcAGCAGCGCGCUCUUg- -3' miRNA: 3'- gUUGUaGCAC-UUGUCGCGCGAGAGgu -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 73312 | 0.67 | 0.950197 |
Target: 5'- cCAGCG-CGUGGGC-GCGCGC-C-CCAu -3' miRNA: 3'- -GUUGUaGCACUUGuCGCGCGaGaGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 72224 | 0.67 | 0.936132 |
Target: 5'- gGGCAUCGUcGAgugGgGGCGCGC-CUUCGu -3' miRNA: 3'- gUUGUAGCA-CU---UgUCGCGCGaGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 11358 | 0.69 | 0.8874 |
Target: 5'- uCAGCAUCGcGcccuCgAGCGCGCUCgCCAu -3' miRNA: 3'- -GUUGUAGCaCuu--G-UCGCGCGAGaGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 110080 | 0.79 | 0.36859 |
Target: 5'- -cGCGUCuGUGAGgCAGUGCGUUCUCCGu -3' miRNA: 3'- guUGUAG-CACUU-GUCGCGCGAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 100917 | 0.67 | 0.930935 |
Target: 5'- --cCGUCGUGAGCggagacgaguAGCGCGCgC-CCAg -3' miRNA: 3'- guuGUAGCACUUG----------UCGCGCGaGaGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 104971 | 0.81 | 0.284488 |
Target: 5'- cCGGCA-CGUGAGCGGCGUgaugacccuGCUCUCCAa -3' miRNA: 3'- -GUUGUaGCACUUGUCGCG---------CGAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 31879 | 0.69 | 0.894373 |
Target: 5'- -----cCGUGGGCAcggucuuCGCGCUCUCCAc -3' miRNA: 3'- guuguaGCACUUGUc------GCGCGAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 36135 | 0.68 | 0.9138 |
Target: 5'- ---uGUCGUGcGCGGCGUGCgggUCCAu -3' miRNA: 3'- guugUAGCACuUGUCGCGCGag-AGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 63415 | 0.69 | 0.880184 |
Target: 5'- uGGCGcgcUCGU--ACAGCGCGCgguUCUCCGc -3' miRNA: 3'- gUUGU---AGCAcuUGUCGCGCG---AGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 103126 | 0.71 | 0.785688 |
Target: 5'- gCGGCAUCGUGc---GCGCGCUCuacagcgUCCAg -3' miRNA: 3'- -GUUGUAGCACuuguCGCGCGAG-------AGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 88328 | 0.73 | 0.685758 |
Target: 5'- -----cCGUGcgcucCGGCGCGCUCUCCAg -3' miRNA: 3'- guuguaGCACuu---GUCGCGCGAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 108441 | 0.75 | 0.559046 |
Target: 5'- gGGCuucCG-GAACAGCGCGCUCUUCu -3' miRNA: 3'- gUUGua-GCaCUUGUCGCGCGAGAGGu -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 37371 | 0.66 | 0.958326 |
Target: 5'- -uACAgCGaGGGCAGCGUGUUCUCg- -3' miRNA: 3'- guUGUaGCaCUUGUCGCGCGAGAGgu -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 108735 | 0.66 | 0.954383 |
Target: 5'- gGACAUCG-GAuucucGCGGCGCGUgggCCGc -3' miRNA: 3'- gUUGUAGCaCU-----UGUCGCGCGagaGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 117410 | 0.67 | 0.941074 |
Target: 5'- aCGACAUCGUGGACuucGagaGCGUg-UCCAa -3' miRNA: 3'- -GUUGUAGCACUUGu--Cg--CGCGagAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 100243 | 0.67 | 0.936132 |
Target: 5'- aCGGCAagcUCGUGGAgGGCGCcgagcggguGCUcCUCCu -3' miRNA: 3'- -GUUGU---AGCACUUgUCGCG---------CGA-GAGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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