miRNA display CGI


Results 61 - 80 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 3' -52.7 NC_005337.1 + 66766 0.69 0.8874
Target:  5'- -cGCAcgCGcGGGCcgcugGGCGUGCUCUCCAa -3'
miRNA:   3'- guUGUa-GCaCUUG-----UCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 2564 0.69 0.865046
Target:  5'- ---aGUCGU--ACAGCGCGgaCUCCAu -3'
miRNA:   3'- guugUAGCAcuUGUCGCGCgaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 103357 0.7 0.840665
Target:  5'- gGugGUCGaGAACGGCGUGCUCg--- -3'
miRNA:   3'- gUugUAGCaCUUGUCGCGCGAGaggu -5'
25667 3' -52.7 NC_005337.1 + 131402 0.7 0.82338
Target:  5'- cCGugAUCGUGuucccGCuGGCGCGCggCUCCGc -3'
miRNA:   3'- -GUugUAGCACu----UG-UCGCGCGa-GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 21818 0.72 0.727253
Target:  5'- gCAGCucuUCGUGc---GCGCGCUCUCCc -3'
miRNA:   3'- -GUUGu--AGCACuuguCGCGCGAGAGGu -5'
25667 3' -52.7 NC_005337.1 + 66139 0.72 0.716986
Target:  5'- aAGCG-CGUGGACGGUcCGUUCUCCGc -3'
miRNA:   3'- gUUGUaGCACUUGUCGcGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 22687 0.67 0.936132
Target:  5'- gGACAUgGaccUGAACGGCGCGUUCa--- -3'
miRNA:   3'- gUUGUAgC---ACUUGUCGCGCGAGaggu -5'
25667 3' -52.7 NC_005337.1 + 99718 0.67 0.936132
Target:  5'- cCAuCGUCGcGGACAG-GaCGCUCUCCc -3'
miRNA:   3'- -GUuGUAGCaCUUGUCgC-GCGAGAGGu -5'
25667 3' -52.7 NC_005337.1 + 61221 0.66 0.971749
Target:  5'- aCGACGguggCGaUGGacagccGCAGCGUGCcCUCCGu -3'
miRNA:   3'- -GUUGUa---GC-ACU------UGUCGCGCGaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 55351 0.66 0.971749
Target:  5'- aAGCG-CGUGc---GCGCGCUCUUCGa -3'
miRNA:   3'- gUUGUaGCACuuguCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 64594 0.66 0.968733
Target:  5'- aCGACuUCGUGAACAGCGUGgUg---- -3'
miRNA:   3'- -GUUGuAGCACUUGUCGCGCgAgaggu -5'
25667 3' -52.7 NC_005337.1 + 103746 0.66 0.968733
Target:  5'- --cCAUCGUGcuCAGCaagGCGCUggagacCUCCAa -3'
miRNA:   3'- guuGUAGCACuuGUCG---CGCGA------GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 67803 0.66 0.968733
Target:  5'- -cGCcUCGcugggGAACAGCGCGCgcaucaUCCGu -3'
miRNA:   3'- guUGuAGCa----CUUGUCGCGCGag----AGGU- -5'
25667 3' -52.7 NC_005337.1 + 95623 0.66 0.965495
Target:  5'- gCGGCGUcCGUGGGCgcgGGCcCGCUCgCCAu -3'
miRNA:   3'- -GUUGUA-GCACUUG---UCGcGCGAGaGGU- -5'
25667 3' -52.7 NC_005337.1 + 82556 0.66 0.965495
Target:  5'- gCAAguUgGUGugcagcACGGCGCGCuggaUCUCCAu -3'
miRNA:   3'- -GUUguAgCACu-----UGUCGCGCG----AGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 32103 0.66 0.965495
Target:  5'- -cACGUUGUacauGGCGGCGCGCaUgUCCAg -3'
miRNA:   3'- guUGUAGCAc---UUGUCGCGCG-AgAGGU- -5'
25667 3' -52.7 NC_005337.1 + 67736 0.66 0.962028
Target:  5'- gGACcggCG-GcGCGGCGCGCagCUCCAg -3'
miRNA:   3'- gUUGua-GCaCuUGUCGCGCGa-GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 122393 0.66 0.962028
Target:  5'- gCGAgGUCGUGcugcgcGGCGGCGCGCggcgCCu -3'
miRNA:   3'- -GUUgUAGCAC------UUGUCGCGCGaga-GGu -5'
25667 3' -52.7 NC_005337.1 + 98774 0.67 0.941074
Target:  5'- gCAGCGcCGUGGAcCGGUacaacGCGCUCUCgAg -3'
miRNA:   3'- -GUUGUaGCACUU-GUCG-----CGCGAGAGgU- -5'
25667 3' -52.7 NC_005337.1 + 120230 0.67 0.941074
Target:  5'- aCAGCAUCGccGAGCAGUGCGUguaCgaacCCGc -3'
miRNA:   3'- -GUUGUAGCa-CUUGUCGCGCGa--Ga---GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.