Results 81 - 100 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25667 | 3' | -52.7 | NC_005337.1 | + | 32103 | 0.66 | 0.965495 |
Target: 5'- -cACGUUGUacauGGCGGCGCGCaUgUCCAg -3' miRNA: 3'- guUGUAGCAc---UUGUCGCGCG-AgAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 82556 | 0.66 | 0.965495 |
Target: 5'- gCAAguUgGUGugcagcACGGCGCGCuggaUCUCCAu -3' miRNA: 3'- -GUUguAgCACu-----UGUCGCGCG----AGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 95623 | 0.66 | 0.965495 |
Target: 5'- gCGGCGUcCGUGGGCgcgGGCcCGCUCgCCAu -3' miRNA: 3'- -GUUGUA-GCACUUG---UCGcGCGAGaGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 67803 | 0.66 | 0.968733 |
Target: 5'- -cGCcUCGcugggGAACAGCGCGCgcaucaUCCGu -3' miRNA: 3'- guUGuAGCa----CUUGUCGCGCGag----AGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 103746 | 0.66 | 0.968733 |
Target: 5'- --cCAUCGUGcuCAGCaagGCGCUggagacCUCCAa -3' miRNA: 3'- guuGUAGCACuuGUCG---CGCGA------GAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 64594 | 0.66 | 0.968733 |
Target: 5'- aCGACuUCGUGAACAGCGUGgUg---- -3' miRNA: 3'- -GUUGuAGCACUUGUCGCGCgAgaggu -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 55351 | 0.66 | 0.971749 |
Target: 5'- aAGCG-CGUGc---GCGCGCUCUUCGa -3' miRNA: 3'- gUUGUaGCACuuguCGCGCGAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 15716 | 0.66 | 0.962028 |
Target: 5'- gGACGUCGUGcg-AGCGCGCgaggUCCc -3' miRNA: 3'- gUUGUAGCACuugUCGCGCGag--AGGu -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 50411 | 0.66 | 0.958326 |
Target: 5'- -cGCGUCGgugacgGAGCGGCGgGCgcuUCCGc -3' miRNA: 3'- guUGUAGCa-----CUUGUCGCgCGag-AGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 103943 | 0.66 | 0.958326 |
Target: 5'- uCAACAacCGcGAGCGcGUGCGCUcCUCCGc -3' miRNA: 3'- -GUUGUa-GCaCUUGU-CGCGCGA-GAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 3939 | 0.67 | 0.930401 |
Target: 5'- gCGGCGUCGagcuGCAGCaGCGCUCguacacgUCCAc -3' miRNA: 3'- -GUUGUAGCacu-UGUCG-CGCGAG-------AGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 22687 | 0.67 | 0.936132 |
Target: 5'- gGACAUgGaccUGAACGGCGCGUUCa--- -3' miRNA: 3'- gUUGUAgC---ACUUGUCGCGCGAGaggu -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 99718 | 0.67 | 0.936132 |
Target: 5'- cCAuCGUCGcGGACAG-GaCGCUCUCCc -3' miRNA: 3'- -GUuGUAGCaCUUGUCgC-GCGAGAGGu -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 120230 | 0.67 | 0.941074 |
Target: 5'- aCAGCAUCGccGAGCAGUGCGUguaCgaacCCGc -3' miRNA: 3'- -GUUGUAGCa-CUUGUCGCGCGa--Ga---GGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 98774 | 0.67 | 0.941074 |
Target: 5'- gCAGCGcCGUGGAcCGGUacaacGCGCUCUCgAg -3' miRNA: 3'- -GUUGUaGCACUU-GUCG-----CGCGAGAGgU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 68729 | 0.67 | 0.950197 |
Target: 5'- aGACGccCGUGcugcgcACAGUGCGC-CUCCAg -3' miRNA: 3'- gUUGUa-GCACu-----UGUCGCGCGaGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 131084 | 0.66 | 0.954383 |
Target: 5'- gCGAguUCGUGGuCuGCGCGCUggCCAu -3' miRNA: 3'- -GUUguAGCACUuGuCGCGCGAgaGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 15266 | 0.66 | 0.954383 |
Target: 5'- gAACGUUGUG-GCGaCGCGC-CUCCGc -3' miRNA: 3'- gUUGUAGCACuUGUcGCGCGaGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 48854 | 0.66 | 0.958326 |
Target: 5'- gAGCAUCGUcauGGACgAGUGCGCgUCcCCGc -3' miRNA: 3'- gUUGUAGCA---CUUG-UCGCGCG-AGaGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 91536 | 0.66 | 0.958326 |
Target: 5'- aGGCGUCGgucAGCAGCGCGCggaugUUCAg -3' miRNA: 3'- gUUGUAGCac-UUGUCGCGCGag---AGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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