miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 3' -52.7 NC_005337.1 + 15716 0.66 0.962028
Target:  5'- gGACGUCGUGcg-AGCGCGCgaggUCCc -3'
miRNA:   3'- gUUGUAGCACuugUCGCGCGag--AGGu -5'
25667 3' -52.7 NC_005337.1 + 109887 0.66 0.959835
Target:  5'- gAGCAUgGUGAucuggucgcccggacACAGCGCGgagaaCUcCUCCAg -3'
miRNA:   3'- gUUGUAgCACU---------------UGUCGCGC-----GA-GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 91536 0.66 0.958326
Target:  5'- aGGCGUCGgucAGCAGCGCGCggaugUUCAg -3'
miRNA:   3'- gUUGUAGCac-UUGUCGCGCGag---AGGU- -5'
25667 3' -52.7 NC_005337.1 + 48854 0.66 0.958326
Target:  5'- gAGCAUCGUcauGGACgAGUGCGCgUCcCCGc -3'
miRNA:   3'- gUUGUAGCA---CUUG-UCGCGCG-AGaGGU- -5'
25667 3' -52.7 NC_005337.1 + 50411 0.66 0.958326
Target:  5'- -cGCGUCGgugacgGAGCGGCGgGCgcuUCCGc -3'
miRNA:   3'- guUGUAGCa-----CUUGUCGCgCGag-AGGU- -5'
25667 3' -52.7 NC_005337.1 + 48049 0.66 0.958326
Target:  5'- aCGACG-CGcGGAUAGacgcCGUGCUCUCCGu -3'
miRNA:   3'- -GUUGUaGCaCUUGUC----GCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 57476 0.66 0.958326
Target:  5'- -uGCAgggCGUGAACGGCGCGgUgcgCCu -3'
miRNA:   3'- guUGUa--GCACUUGUCGCGCgAga-GGu -5'
25667 3' -52.7 NC_005337.1 + 95014 0.66 0.958326
Target:  5'- aCAGCggCGgcuGCuGCGCGUUCUUCAc -3'
miRNA:   3'- -GUUGuaGCacuUGuCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 37371 0.66 0.958326
Target:  5'- -uACAgCGaGGGCAGCGUGUUCUCg- -3'
miRNA:   3'- guUGUaGCaCUUGUCGCGCGAGAGgu -5'
25667 3' -52.7 NC_005337.1 + 103943 0.66 0.958326
Target:  5'- uCAACAacCGcGAGCGcGUGCGCUcCUCCGc -3'
miRNA:   3'- -GUUGUa-GCaCUUGU-CGCGCGA-GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 130382 0.66 0.954383
Target:  5'- --cCGUCGUGGACcuGCGCGUcCUCa- -3'
miRNA:   3'- guuGUAGCACUUGu-CGCGCGaGAGgu -5'
25667 3' -52.7 NC_005337.1 + 108735 0.66 0.954383
Target:  5'- gGACAUCG-GAuucucGCGGCGCGUgggCCGc -3'
miRNA:   3'- gUUGUAGCaCU-----UGUCGCGCGagaGGU- -5'
25667 3' -52.7 NC_005337.1 + 131084 0.66 0.954383
Target:  5'- gCGAguUCGUGGuCuGCGCGCUggCCAu -3'
miRNA:   3'- -GUUguAGCACUuGuCGCGCGAgaGGU- -5'
25667 3' -52.7 NC_005337.1 + 15266 0.66 0.954383
Target:  5'- gAACGUUGUG-GCGaCGCGC-CUCCGc -3'
miRNA:   3'- gUUGUAGCACuUGUcGCGCGaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 106633 0.66 0.954383
Target:  5'- aCGAgAUCGU----GGCGCGCUCcgCCAa -3'
miRNA:   3'- -GUUgUAGCAcuugUCGCGCGAGa-GGU- -5'
25667 3' -52.7 NC_005337.1 + 73312 0.67 0.950197
Target:  5'- cCAGCG-CGUGGGC-GCGCGC-C-CCAu -3'
miRNA:   3'- -GUUGUaGCACUUGuCGCGCGaGaGGU- -5'
25667 3' -52.7 NC_005337.1 + 68729 0.67 0.950197
Target:  5'- aGACGccCGUGcugcgcACAGUGCGC-CUCCAg -3'
miRNA:   3'- gUUGUa-GCACu-----UGUCGCGCGaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 31083 0.67 0.948892
Target:  5'- aCGAUcgCG-GggUucagcgaggccacgAGCGCGUUCUCCAc -3'
miRNA:   3'- -GUUGuaGCaCuuG--------------UCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 98774 0.67 0.941074
Target:  5'- gCAGCGcCGUGGAcCGGUacaacGCGCUCUCgAg -3'
miRNA:   3'- -GUUGUaGCACUU-GUCG-----CGCGAGAGgU- -5'
25667 3' -52.7 NC_005337.1 + 112598 0.67 0.941074
Target:  5'- aAACGUCGUGAccagguaguGCAGCGCGagcacgugCcCCAg -3'
miRNA:   3'- gUUGUAGCACU---------UGUCGCGCga------GaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.