Results 41 - 54 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25667 | 5' | -57.3 | NC_005337.1 | + | 18693 | 0.76 | 0.310019 |
Target: 5'- gUCGGAGAcAGCAGCUCG-GGCCc--- -3' miRNA: 3'- gAGCCUCU-UCGUCGAGCuCCGGcacu -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 56102 | 0.75 | 0.358189 |
Target: 5'- -gUGGAGAAGguGCUCGAGGCgcacggcaucgccagCGUGc -3' miRNA: 3'- gaGCCUCUUCguCGAGCUCCG---------------GCACu -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 52361 | 0.73 | 0.447896 |
Target: 5'- -cCGGGGAcggGGCcgcugacGGCUgCGGGGCCGUGGa -3' miRNA: 3'- gaGCCUCU---UCG-------UCGA-GCUCCGGCACU- -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 75784 | 0.7 | 0.61564 |
Target: 5'- gCUCGuuaagcugcuGGAGCGGCUgGAGGCCGaGAa -3' miRNA: 3'- -GAGCcu--------CUUCGUCGAgCUCCGGCaCU- -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 112391 | 0.69 | 0.636117 |
Target: 5'- -cUGGAGGAGC-GCcgCGcAGGCCGUGc -3' miRNA: 3'- gaGCCUCUUCGuCGa-GC-UCCGGCACu -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 74569 | 0.69 | 0.650447 |
Target: 5'- -aCGGAGAuuuccaugcucgaaaAGCGGCUCGggcucucccGGGUCGUGc -3' miRNA: 3'- gaGCCUCU---------------UCGUCGAGC---------UCCGGCACu -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 1045 | 0.69 | 0.656581 |
Target: 5'- --gGGAGGcgGGCGGCggGAGGCCGgcgGGg -3' miRNA: 3'- gagCCUCU--UCGUCGagCUCCGGCa--CU- -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 89977 | 0.69 | 0.665768 |
Target: 5'- gCUCGGGGGAGCGGCgccguaaaugcccUCGucGCCGc-- -3' miRNA: 3'- -GAGCCUCUUCGUCG-------------AGCucCGGCacu -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 96435 | 0.69 | 0.676966 |
Target: 5'- -cUGGAGAaccucaagcgcaAGUucAGCUuccgCGAGGCCGUGAc -3' miRNA: 3'- gaGCCUCU------------UCG--UCGA----GCUCCGGCACU- -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 122295 | 0.69 | 0.687108 |
Target: 5'- -gCGGAGGAGCuccgCGAGGCgggCGUGAa -3' miRNA: 3'- gaGCCUCUUCGucgaGCUCCG---GCACU- -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 98982 | 0.68 | 0.707245 |
Target: 5'- -gCGcGAuGAAGU-GCaUCGAGGCCGUGGa -3' miRNA: 3'- gaGC-CU-CUUCGuCG-AGCUCCGGCACU- -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 103322 | 0.68 | 0.707245 |
Target: 5'- -cCGcGAGGAGCGGCUgGAGGacauccugcgCGUGAu -3' miRNA: 3'- gaGC-CUCUUCGUCGAgCUCCg---------GCACU- -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 48541 | 0.68 | 0.717223 |
Target: 5'- --aGGAGGAGCGGCggGAGuucguaGCCGUGu -3' miRNA: 3'- gagCCUCUUCGUCGagCUC------CGGCACu -5' |
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25667 | 5' | -57.3 | NC_005337.1 | + | 44421 | 1.09 | 0.001923 |
Target: 5'- gCUCGGAGAAGCAGCUCGAGGCCGUGAa -3' miRNA: 3'- -GAGCCUCUUCGUCGAGCUCCGGCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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