miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 5' -57.3 NC_005337.1 + 15993 0.68 0.697204
Target:  5'- -cCGGAGucGCAGCUgCGAGaCCGUa- -3'
miRNA:   3'- gaGCCUCuuCGUCGA-GCUCcGGCAcu -5'
25667 5' -57.3 NC_005337.1 + 44223 0.68 0.717223
Target:  5'- -gCGGAGcGGGCgAGCgcCGAGGCCGUc- -3'
miRNA:   3'- gaGCCUC-UUCG-UCGa-GCUCCGGCAcu -5'
25667 5' -57.3 NC_005337.1 + 131261 0.65 0.850697
Target:  5'- aCUCGGAGuccuucguGCGGCUCGucucGuacuucuaccccucGGCCGUGc -3'
miRNA:   3'- -GAGCCUCuu------CGUCGAGC----U--------------CCGGCACu -5'
25667 5' -57.3 NC_005337.1 + 129065 0.66 0.836978
Target:  5'- gUCGGAGAGGUGGUcgCGcugcuGGCCGa-- -3'
miRNA:   3'- gAGCCUCUUCGUCGa-GCu----CCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 9247 0.66 0.817567
Target:  5'- uUCcccGAGAAGUGGCUguccacgcgcucuaUGAGGCUGUGGa -3'
miRNA:   3'- gAGc--CUCUUCGUCGA--------------GCUCCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 60271 0.66 0.814967
Target:  5'- gUCGGGGcAGGCgcgggggugggagugGGCUUGGGGUCGUc- -3'
miRNA:   3'- gAGCCUC-UUCG---------------UCGAGCUCCGGCAcu -5'
25667 5' -57.3 NC_005337.1 + 88289 0.66 0.836978
Target:  5'- gUCGGuGGAGGCggacaucaAGCUCGGGGacgucagCGUGGa -3'
miRNA:   3'- gAGCC-UCUUCG--------UCGAGCUCCg------GCACU- -5'
25667 5' -57.3 NC_005337.1 + 73480 0.67 0.79365
Target:  5'- -gCGGAGGAccccaAGCUCGucgcGGUCGUGAa -3'
miRNA:   3'- gaGCCUCUUcg---UCGAGCu---CCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 32944 0.67 0.784512
Target:  5'- gCUCGGAGGcuaGGCGGUg-GAGGuuGUa- -3'
miRNA:   3'- -GAGCCUCU---UCGUCGagCUCCggCAcu -5'
25667 5' -57.3 NC_005337.1 + 30561 0.67 0.784512
Target:  5'- aCUCGG-GGAGCuccccGUg-GAGGCCGUGc -3'
miRNA:   3'- -GAGCCuCUUCGu----CGagCUCCGGCACu -5'
25667 5' -57.3 NC_005337.1 + 129614 0.67 0.775238
Target:  5'- -gUGGAGcucguccGGCGGCUCGuGGCCGccgGGu -3'
miRNA:   3'- gaGCCUCu------UCGUCGAGCuCCGGCa--CU- -5'
25667 5' -57.3 NC_005337.1 + 2402 0.68 0.734014
Target:  5'- cCUCcaGGAGGCAGCggacgaccucggggUCGGGGCCGUc- -3'
miRNA:   3'- -GAGccUCUUCGUCG--------------AGCUCCGGCAcu -5'
25667 5' -57.3 NC_005337.1 + 22353 0.68 0.727129
Target:  5'- aCUCGGAGGugaAGCa-GGGGCgCGUGAa -3'
miRNA:   3'- -GAGCCUCUucgUCGagCUCCG-GCACU- -5'
25667 5' -57.3 NC_005337.1 + 19609 0.79 0.196406
Target:  5'- -gCGGAGAGGCGGcCUCGAGGCCc--- -3'
miRNA:   3'- gaGCCUCUUCGUC-GAGCUCCGGcacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.