miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 5' -57.3 NC_005337.1 + 74660 0.67 0.765836
Target:  5'- --aGGugaAGAAGCGGCUCGgcaacgcgaaGGGCCuGUGGc -3'
miRNA:   3'- gagCC---UCUUCGUCGAGC----------UCCGG-CACU- -5'
25667 5' -57.3 NC_005337.1 + 119678 0.67 0.760137
Target:  5'- aCUCGGGGAacauggccGGCgccaucguggaccggAGCcgCGAGGCCG-GAu -3'
miRNA:   3'- -GAGCCUCU--------UCG---------------UCGa-GCUCCGGCaCU- -5'
25667 5' -57.3 NC_005337.1 + 23070 0.67 0.756314
Target:  5'- gCUCGu--GGGCGGCUCGGGGuCCGgGAa -3'
miRNA:   3'- -GAGCcucUUCGUCGAGCUCC-GGCaCU- -5'
25667 5' -57.3 NC_005337.1 + 121257 0.67 0.756314
Target:  5'- cCUCGGuGAAGUAGUcgUCGcAGGCCu--- -3'
miRNA:   3'- -GAGCCuCUUCGUCG--AGC-UCCGGcacu -5'
25667 5' -57.3 NC_005337.1 + 68644 0.68 0.746683
Target:  5'- -gCGGAGggGCGGauCUUGGGGUgGuUGAg -3'
miRNA:   3'- gaGCCUCuuCGUC--GAGCUCCGgC-ACU- -5'
25667 5' -57.3 NC_005337.1 + 2402 0.68 0.734014
Target:  5'- cCUCcaGGAGGCAGCggacgaccucggggUCGGGGCCGUc- -3'
miRNA:   3'- -GAGccUCUUCGUCG--------------AGCUCCGGCAcu -5'
25667 5' -57.3 NC_005337.1 + 22353 0.68 0.727129
Target:  5'- aCUCGGAGGugaAGCa-GGGGCgCGUGAa -3'
miRNA:   3'- -GAGCCUCUucgUCGagCUCCG-GCACU- -5'
25667 5' -57.3 NC_005337.1 + 48541 0.68 0.717223
Target:  5'- --aGGAGGAGCGGCggGAGuucguaGCCGUGu -3'
miRNA:   3'- gagCCUCUUCGUCGagCUC------CGGCACu -5'
25667 5' -57.3 NC_005337.1 + 44223 0.68 0.717223
Target:  5'- -gCGGAGcGGGCgAGCgcCGAGGCCGUc- -3'
miRNA:   3'- gaGCCUC-UUCG-UCGa-GCUCCGGCAcu -5'
25667 5' -57.3 NC_005337.1 + 103322 0.68 0.707245
Target:  5'- -cCGcGAGGAGCGGCUgGAGGacauccugcgCGUGAu -3'
miRNA:   3'- gaGC-CUCUUCGUCGAgCUCCg---------GCACU- -5'
25667 5' -57.3 NC_005337.1 + 98982 0.68 0.707245
Target:  5'- -gCGcGAuGAAGU-GCaUCGAGGCCGUGGa -3'
miRNA:   3'- gaGC-CU-CUUCGuCG-AGCUCCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 15993 0.68 0.697204
Target:  5'- -cCGGAGucGCAGCUgCGAGaCCGUa- -3'
miRNA:   3'- gaGCCUCuuCGUCGA-GCUCcGGCAcu -5'
25667 5' -57.3 NC_005337.1 + 122295 0.69 0.687108
Target:  5'- -gCGGAGGAGCuccgCGAGGCgggCGUGAa -3'
miRNA:   3'- gaGCCUCUUCGucgaGCUCCG---GCACU- -5'
25667 5' -57.3 NC_005337.1 + 96435 0.69 0.676966
Target:  5'- -cUGGAGAaccucaagcgcaAGUucAGCUuccgCGAGGCCGUGAc -3'
miRNA:   3'- gaGCCUCU------------UCG--UCGA----GCUCCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 74175 0.69 0.676966
Target:  5'- -gCGG-GAGGCGcGCUCG-GGCCGgGAg -3'
miRNA:   3'- gaGCCuCUUCGU-CGAGCuCCGGCaCU- -5'
25667 5' -57.3 NC_005337.1 + 48637 0.69 0.666787
Target:  5'- gCUCGGcGGAcgccagcgcGCAGCUgGAcGCCGUGAu -3'
miRNA:   3'- -GAGCCuCUU---------CGUCGAgCUcCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 2249 0.69 0.666787
Target:  5'- cCUUGGAGAGGaa-CUCGcggaAGGCCGUGu -3'
miRNA:   3'- -GAGCCUCUUCgucGAGC----UCCGGCACu -5'
25667 5' -57.3 NC_005337.1 + 89977 0.69 0.665768
Target:  5'- gCUCGGGGGAGCGGCgccguaaaugcccUCGucGCCGc-- -3'
miRNA:   3'- -GAGCCUCUUCGUCG-------------AGCucCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 1045 0.69 0.656581
Target:  5'- --gGGAGGcgGGCGGCggGAGGCCGgcgGGg -3'
miRNA:   3'- gagCCUCU--UCGUCGagCUCCGGCa--CU- -5'
25667 5' -57.3 NC_005337.1 + 1045 0.69 0.656581
Target:  5'- --gGGAGGcgGGCGGCggGAGGCCGgcgGGg -3'
miRNA:   3'- gagCCUCU--UCGUCGagCUCCGGCa--CU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.