miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25668 3' -58.4 NC_005337.1 + 78587 0.66 0.822827
Target:  5'- gUCACCGGGuacaugAGCACgcucugcuCGAUcacggacuugGGGUUCUGCu -3'
miRNA:   3'- -AGUGGCCC------UCGUG--------GCUG----------CUCAGGACG- -5'
25668 3' -58.4 NC_005337.1 + 75707 0.66 0.822827
Target:  5'- gCGCCGGaGAGCAUCGcCGuGUaCCacaucccgcUGCg -3'
miRNA:   3'- aGUGGCC-CUCGUGGCuGCuCA-GG---------ACG- -5'
25668 3' -58.4 NC_005337.1 + 75610 0.66 0.814357
Target:  5'- gUACCugGGGAGCGCCGAgGAcgcgcgggccGUCgUGa -3'
miRNA:   3'- aGUGG--CCCUCGUGGCUgCU----------CAGgACg -5'
25668 3' -58.4 NC_005337.1 + 16190 0.66 0.814357
Target:  5'- gCGCCGGaGAGCcCCGAgGAGcUCUa-- -3'
miRNA:   3'- aGUGGCC-CUCGuGGCUgCUC-AGGacg -5'
25668 3' -58.4 NC_005337.1 + 45313 0.66 0.814357
Target:  5'- aCACCGGGAccGCGCCcuccgccuccGCGcGGUCC-GCg -3'
miRNA:   3'- aGUGGCCCU--CGUGGc---------UGC-UCAGGaCG- -5'
25668 3' -58.4 NC_005337.1 + 1568 0.66 0.814357
Target:  5'- cCACaaagaGGGuGgACgCGACGAGU-CUGCg -3'
miRNA:   3'- aGUGg----CCCuCgUG-GCUGCUCAgGACG- -5'
25668 3' -58.4 NC_005337.1 + 93525 0.66 0.813501
Target:  5'- aCACUGGcGAcggccguGCACCcagagacGCGAGUCCgGCg -3'
miRNA:   3'- aGUGGCC-CU-------CGUGGc------UGCUCAGGaCG- -5'
25668 3' -58.4 NC_005337.1 + 70733 0.66 0.805726
Target:  5'- aCAguCCGGcaaacGAGCGCCGcacgccCGAGgCCUGCa -3'
miRNA:   3'- aGU--GGCC-----CUCGUGGCu-----GCUCaGGACG- -5'
25668 3' -58.4 NC_005337.1 + 12867 0.66 0.805726
Target:  5'- gUCGCCGGGGagccGCAaguagaCGugGAGcggCgUGCa -3'
miRNA:   3'- -AGUGGCCCU----CGUg-----GCugCUCa--GgACG- -5'
25668 3' -58.4 NC_005337.1 + 49296 0.66 0.805726
Target:  5'- cCGCgaaCGGGAucacGUACCGcgGCGAGccCCUGCa -3'
miRNA:   3'- aGUG---GCCCU----CGUGGC--UGCUCa-GGACG- -5'
25668 3' -58.4 NC_005337.1 + 1116 0.66 0.805726
Target:  5'- cCGCCGGGAGCAgCCGcagcacgcgcGCGA--CCaGCu -3'
miRNA:   3'- aGUGGCCCUCGU-GGC----------UGCUcaGGaCG- -5'
25668 3' -58.4 NC_005337.1 + 69143 0.66 0.805726
Target:  5'- gUACUGGGAGCGCgucucGCGcGUgCUGCu -3'
miRNA:   3'- aGUGGCCCUCGUGgc---UGCuCAgGACG- -5'
25668 3' -58.4 NC_005337.1 + 54498 0.66 0.805726
Target:  5'- aCACCaucuGGGAGaCGuCCGGCGAGgagCUGUu -3'
miRNA:   3'- aGUGG----CCCUC-GU-GGCUGCUCag-GACG- -5'
25668 3' -58.4 NC_005337.1 + 48878 0.66 0.796943
Target:  5'- cUCGgCGGaGAGCGCCGcgcACGGcUCCagUGCa -3'
miRNA:   3'- -AGUgGCC-CUCGUGGC---UGCUcAGG--ACG- -5'
25668 3' -58.4 NC_005337.1 + 1116 0.66 0.796943
Target:  5'- cCGCCGGGAGCAgCCGcagcacgcgcGCGAccagcUCC-GCg -3'
miRNA:   3'- aGUGGCCCUCGU-GGC----------UGCUc----AGGaCG- -5'
25668 3' -58.4 NC_005337.1 + 90836 0.66 0.796943
Target:  5'- aCACCGcGGGGUGCCGcuCGccGUCCgcggGCu -3'
miRNA:   3'- aGUGGC-CCUCGUGGCu-GCu-CAGGa---CG- -5'
25668 3' -58.4 NC_005337.1 + 22208 0.66 0.796943
Target:  5'- cUCACCGaGAGCAUCcGCGAGUacaUGUu -3'
miRNA:   3'- -AGUGGCcCUCGUGGcUGCUCAgg-ACG- -5'
25668 3' -58.4 NC_005337.1 + 95566 0.66 0.796943
Target:  5'- cCGuuGGcGAGCACgGACGggcAGUCCgggGUc -3'
miRNA:   3'- aGUggCC-CUCGUGgCUGC---UCAGGa--CG- -5'
25668 3' -58.4 NC_005337.1 + 22405 0.66 0.796943
Target:  5'- cCGCCuGGAGgacgaCACCGAcaucCGGGgCCUGCu -3'
miRNA:   3'- aGUGGcCCUC-----GUGGCU----GCUCaGGACG- -5'
25668 3' -58.4 NC_005337.1 + 91093 0.66 0.796943
Target:  5'- -gGCCGGG-GCGaucagCGGCGAgGUCCggucgGCg -3'
miRNA:   3'- agUGGCCCuCGUg----GCUGCU-CAGGa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.