miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25668 5' -52.5 NC_005337.1 + 84042 0.66 0.981477
Target:  5'- cCGGCGgaGGcgCGCaCGACGCCcUCGGgGa -3'
miRNA:   3'- -GUUGC--UCuaGCG-GCUGCGGuAGUUgC- -5'
25668 5' -52.5 NC_005337.1 + 87463 0.66 0.981477
Target:  5'- ---gGAGAUgGCCagcGCGCCcUCGGCGu -3'
miRNA:   3'- guugCUCUAgCGGc--UGCGGuAGUUGC- -5'
25668 5' -52.5 NC_005337.1 + 25705 0.66 0.981477
Target:  5'- gAGCGGGuuGUCcgGCCG-CGCCGcCAGCGu -3'
miRNA:   3'- gUUGCUC--UAG--CGGCuGCGGUaGUUGC- -5'
25668 5' -52.5 NC_005337.1 + 43629 0.66 0.981477
Target:  5'- --cCGAGAUcagCGCCGccGCGCgAUCAAgGa -3'
miRNA:   3'- guuGCUCUA---GCGGC--UGCGgUAGUUgC- -5'
25668 5' -52.5 NC_005337.1 + 96757 0.66 0.981477
Target:  5'- aCAACGGGGaguUCGCCGAgGUguucccgggGUCGGCGu -3'
miRNA:   3'- -GUUGCUCU---AGCGGCUgCGg--------UAGUUGC- -5'
25668 5' -52.5 NC_005337.1 + 77809 0.66 0.981477
Target:  5'- uGGCGccgcGGGUCGCUGGCcaCCAUCAccGCGc -3'
miRNA:   3'- gUUGC----UCUAGCGGCUGc-GGUAGU--UGC- -5'
25668 5' -52.5 NC_005337.1 + 100045 0.66 0.981477
Target:  5'- uCGACGGGAcCGUgcGCGUgGUCGACGu -3'
miRNA:   3'- -GUUGCUCUaGCGgcUGCGgUAGUUGC- -5'
25668 5' -52.5 NC_005337.1 + 6592 0.66 0.981477
Target:  5'- gGACGAGccgGCCGACGgucagCAUCAGCu -3'
miRNA:   3'- gUUGCUCuagCGGCUGCg----GUAGUUGc -5'
25668 5' -52.5 NC_005337.1 + 54310 0.66 0.981477
Target:  5'- gGGCGuGGUggacaccagCGgCGACGCCGUCAcCGu -3'
miRNA:   3'- gUUGCuCUA---------GCgGCUGCGGUAGUuGC- -5'
25668 5' -52.5 NC_005337.1 + 72366 0.66 0.981477
Target:  5'- -cGCGcGAUCgcgcggacgGCCGuCGCgGUCAGCGa -3'
miRNA:   3'- guUGCuCUAG---------CGGCuGCGgUAGUUGC- -5'
25668 5' -52.5 NC_005337.1 + 86683 0.66 0.980183
Target:  5'- -cGCGGcGUCGCCcACGCCcagcggcugcggcucGUCGGCGg -3'
miRNA:   3'- guUGCUcUAGCGGcUGCGG---------------UAGUUGC- -5'
25668 5' -52.5 NC_005337.1 + 108106 0.66 0.979283
Target:  5'- -uACGGGAaccucUCGCCggaGACGCUGgUCGGCGu -3'
miRNA:   3'- guUGCUCU-----AGCGG---CUGCGGU-AGUUGC- -5'
25668 5' -52.5 NC_005337.1 + 119830 0.66 0.979283
Target:  5'- gCAGCGcGGcgcUCGguacCCGGCGCCAgCGGCGg -3'
miRNA:   3'- -GUUGCuCU---AGC----GGCUGCGGUaGUUGC- -5'
25668 5' -52.5 NC_005337.1 + 40026 0.66 0.979283
Target:  5'- gGugGAGAUgcuaGCgGGCGUCGUCG-CGg -3'
miRNA:   3'- gUugCUCUAg---CGgCUGCGGUAGUuGC- -5'
25668 5' -52.5 NC_005337.1 + 55602 0.66 0.979283
Target:  5'- ---gGGGAUCGCCaacucgcagaACGCCGacuUCGACGg -3'
miRNA:   3'- guugCUCUAGCGGc---------UGCGGU---AGUUGC- -5'
25668 5' -52.5 NC_005337.1 + 1435 0.66 0.979283
Target:  5'- -uGCGAGcgCGgCGGCGCCGagGugcGCGa -3'
miRNA:   3'- guUGCUCuaGCgGCUGCGGUagU---UGC- -5'
25668 5' -52.5 NC_005337.1 + 9391 0.66 0.979283
Target:  5'- aCGGCGAGGUCcuCgGAgGCCGUaGGCGg -3'
miRNA:   3'- -GUUGCUCUAGc-GgCUgCGGUAgUUGC- -5'
25668 5' -52.5 NC_005337.1 + 111553 0.66 0.976903
Target:  5'- --uCGGGGUCGgCGGUGCCGUaGACGa -3'
miRNA:   3'- guuGCUCUAGCgGCUGCGGUAgUUGC- -5'
25668 5' -52.5 NC_005337.1 + 120140 0.66 0.976903
Target:  5'- gGACGAGcUCGCgGACuUCGUCcGCGu -3'
miRNA:   3'- gUUGCUCuAGCGgCUGcGGUAGuUGC- -5'
25668 5' -52.5 NC_005337.1 + 114469 0.66 0.976903
Target:  5'- cCGACGAcGUCGaCGACGUgcucgugaaCGUCAACGc -3'
miRNA:   3'- -GUUGCUcUAGCgGCUGCG---------GUAGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.