miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25668 5' -52.5 NC_005337.1 + 741 0.7 0.888557
Target:  5'- gGGCGAGAgCG-CGGCGCCcgCGGCc -3'
miRNA:   3'- gUUGCUCUaGCgGCUGCGGuaGUUGc -5'
25668 5' -52.5 NC_005337.1 + 741 0.7 0.888557
Target:  5'- gGGCGAGAgCG-CGGCGCCcgCGGCc -3'
miRNA:   3'- gUUGCUCUaGCgGCUGCGGuaGUUGc -5'
25668 5' -52.5 NC_005337.1 + 913 0.67 0.958271
Target:  5'- gCGACGAGcgCGgCGGCGgCGgcgaggCGGCGg -3'
miRNA:   3'- -GUUGCUCuaGCgGCUGCgGUa-----GUUGC- -5'
25668 5' -52.5 NC_005337.1 + 913 0.67 0.958271
Target:  5'- gCGACGAGcgCGgCGGCGgCGgcgaggCGGCGg -3'
miRNA:   3'- -GUUGCUCuaGCgGCUGCgGUa-----GUUGC- -5'
25668 5' -52.5 NC_005337.1 + 1004 0.7 0.88148
Target:  5'- gGGCGGGcGUCGCCugGAgGCCGUCGAa- -3'
miRNA:   3'- gUUGCUC-UAGCGG--CUgCGGUAGUUgc -5'
25668 5' -52.5 NC_005337.1 + 1004 0.7 0.88148
Target:  5'- gGGCGGGcGUCGCCugGAgGCCGUCGAa- -3'
miRNA:   3'- gUUGCUC-UAGCGG--CUgCGGUAGUUgc -5'
25668 5' -52.5 NC_005337.1 + 1435 0.66 0.979283
Target:  5'- -uGCGAGcgCGgCGGCGCCGagGugcGCGa -3'
miRNA:   3'- guUGCUCuaGCgGCUGCGGUagU---UGC- -5'
25668 5' -52.5 NC_005337.1 + 1711 0.68 0.945884
Target:  5'- gGGCGAGG-CGCCGuacCGCacguUCAGCGc -3'
miRNA:   3'- gUUGCUCUaGCGGCu--GCGgu--AGUUGC- -5'
25668 5' -52.5 NC_005337.1 + 2082 0.77 0.524829
Target:  5'- -cGCGAGcgCGCuCGACGCCAgcgcCAGCGc -3'
miRNA:   3'- guUGCUCuaGCG-GCUGCGGUa---GUUGC- -5'
25668 5' -52.5 NC_005337.1 + 3387 0.68 0.931295
Target:  5'- gGGCGAGAagCGCgCGuGCGCCAUCugguaguaggAGCGg -3'
miRNA:   3'- gUUGCUCUa-GCG-GC-UGCGGUAG----------UUGC- -5'
25668 5' -52.5 NC_005337.1 + 6246 0.68 0.925934
Target:  5'- -cGCGAGucagcGUCGCUGACGCUGgcgcCGGCGu -3'
miRNA:   3'- guUGCUC-----UAGCGGCUGCGGUa---GUUGC- -5'
25668 5' -52.5 NC_005337.1 + 6472 0.67 0.965355
Target:  5'- uGACGucagCGCCGGCGuCCAcCAGCa -3'
miRNA:   3'- gUUGCucuaGCGGCUGC-GGUaGUUGc -5'
25668 5' -52.5 NC_005337.1 + 6592 0.66 0.981477
Target:  5'- gGACGAGccgGCCGACGgucagCAUCAGCu -3'
miRNA:   3'- gUUGCUCuagCGGCUGCg----GUAGUUGc -5'
25668 5' -52.5 NC_005337.1 + 6908 0.67 0.961928
Target:  5'- -cGCGGGuccgCGCCGGCGCg--CAGCa -3'
miRNA:   3'- guUGCUCua--GCGGCUGCGguaGUUGc -5'
25668 5' -52.5 NC_005337.1 + 7471 0.7 0.888557
Target:  5'- gCGACGAGGgcgCGCaCGACGuCCAggUCcACGg -3'
miRNA:   3'- -GUUGCUCUa--GCG-GCUGC-GGU--AGuUGC- -5'
25668 5' -52.5 NC_005337.1 + 8294 0.66 0.976903
Target:  5'- gCAGCGGGGUCugcaGCCG-CGCguUCcGCGc -3'
miRNA:   3'- -GUUGCUCUAG----CGGCuGCGguAGuUGC- -5'
25668 5' -52.5 NC_005337.1 + 9391 0.66 0.979283
Target:  5'- aCGGCGAGGUCcuCgGAgGCCGUaGGCGg -3'
miRNA:   3'- -GUUGCUCUAGc-GgCUgCGGUAgUUGC- -5'
25668 5' -52.5 NC_005337.1 + 9731 0.66 0.974327
Target:  5'- uGGCGAGAUaCGCggucacgaCGGCGCUggcGUCGAUGu -3'
miRNA:   3'- gUUGCUCUA-GCG--------GCUGCGG---UAGUUGC- -5'
25668 5' -52.5 NC_005337.1 + 10348 0.68 0.925934
Target:  5'- gCGugGGGAaCGUCGucACGCCGUCAGa- -3'
miRNA:   3'- -GUugCUCUaGCGGC--UGCGGUAGUUgc -5'
25668 5' -52.5 NC_005337.1 + 10609 0.68 0.936406
Target:  5'- -cGCGGGGgagCGgCGGCGCCAg-GACGa -3'
miRNA:   3'- guUGCUCUa--GCgGCUGCGGUagUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.