miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25668 5' -52.5 NC_005337.1 + 128004 0.72 0.799002
Target:  5'- -uGCGgcugcuccuGGA-CGCCGGCGCCAgcgUCAGCGa -3'
miRNA:   3'- guUGC---------UCUaGCGGCUGCGGU---AGUUGC- -5'
25668 5' -52.5 NC_005337.1 + 21106 0.73 0.71117
Target:  5'- -uACGGGA-CGCCGGcCGCCAcgCAGCGc -3'
miRNA:   3'- guUGCUCUaGCGGCU-GCGGUa-GUUGC- -5'
25668 5' -52.5 NC_005337.1 + 91107 0.73 0.751336
Target:  5'- gCGGCGAGGUCcgGUCGGCGCgCAUgAGCa -3'
miRNA:   3'- -GUUGCUCUAG--CGGCUGCG-GUAgUUGc -5'
25668 5' -52.5 NC_005337.1 + 77168 0.73 0.751336
Target:  5'- -cACGGGGUacUGCCGGCGCCAcCcGCGg -3'
miRNA:   3'- guUGCUCUA--GCGGCUGCGGUaGuUGC- -5'
25668 5' -52.5 NC_005337.1 + 132869 0.72 0.761128
Target:  5'- gCAACGugguGAUCGCCGAcgagcaaaCGCUcUCGGCGg -3'
miRNA:   3'- -GUUGCu---CUAGCGGCU--------GCGGuAGUUGC- -5'
25668 5' -52.5 NC_005337.1 + 11926 0.72 0.761128
Target:  5'- cCAGC-AGGUUGCCGACGUCGUCc-CGg -3'
miRNA:   3'- -GUUGcUCUAGCGGCUGCGGUAGuuGC- -5'
25668 5' -52.5 NC_005337.1 + 20087 0.72 0.7708
Target:  5'- --uUGGGGUggaUGCCGucCGCCAUCAGCGa -3'
miRNA:   3'- guuGCUCUA---GCGGCu-GCGGUAGUUGC- -5'
25668 5' -52.5 NC_005337.1 + 21774 0.72 0.789746
Target:  5'- -uGCGAGGUCuUCGACGCCGUgCuGCGg -3'
miRNA:   3'- guUGCUCUAGcGGCUGCGGUA-GuUGC- -5'
25668 5' -52.5 NC_005337.1 + 18377 0.72 0.789746
Target:  5'- cCAGCGAGAagCGcCCGAUGCCGcgguacUCGACc -3'
miRNA:   3'- -GUUGCUCUa-GC-GGCUGCGGU------AGUUGc -5'
25668 5' -52.5 NC_005337.1 + 76405 0.74 0.690626
Target:  5'- -cGCGGGG-CGCUGGCGCCcguccuccuugGUCAGCGa -3'
miRNA:   3'- guUGCUCUaGCGGCUGCGG-----------UAGUUGC- -5'
25668 5' -52.5 NC_005337.1 + 99314 0.74 0.690626
Target:  5'- gCAGCGccGGGUCGUCGACuGCUcgCAGCGc -3'
miRNA:   3'- -GUUGC--UCUAGCGGCUG-CGGuaGUUGC- -5'
25668 5' -52.5 NC_005337.1 + 62159 0.74 0.680272
Target:  5'- aCGAUGGGGaUGCgGACGCCGUCGAgGu -3'
miRNA:   3'- -GUUGCUCUaGCGgCUGCGGUAGUUgC- -5'
25668 5' -52.5 NC_005337.1 + 19699 0.77 0.514805
Target:  5'- uGGCGuacagCGCCGGCGCCAUCuGCGg -3'
miRNA:   3'- gUUGCucua-GCGGCUGCGGUAGuUGC- -5'
25668 5' -52.5 NC_005337.1 + 49856 0.76 0.575933
Target:  5'- --cCGGGA-CGCCGGCGgCAUCAGCa -3'
miRNA:   3'- guuGCUCUaGCGGCUGCgGUAGUUGc -5'
25668 5' -52.5 NC_005337.1 + 118158 0.75 0.607148
Target:  5'- cCAugGAGGUUGaCGGCGCCG-CGGCGg -3'
miRNA:   3'- -GUugCUCUAGCgGCUGCGGUaGUUGC- -5'
25668 5' -52.5 NC_005337.1 + 73910 0.75 0.638537
Target:  5'- gCAGCGAGAUgcCGCUGGgGCgCAUCGugGg -3'
miRNA:   3'- -GUUGCUCUA--GCGGCUgCG-GUAGUugC- -5'
25668 5' -52.5 NC_005337.1 + 98081 0.75 0.638537
Target:  5'- aCGACGAacccgCGCUGuacaGCGCCAUCAACGg -3'
miRNA:   3'- -GUUGCUcua--GCGGC----UGCGGUAGUUGC- -5'
25668 5' -52.5 NC_005337.1 + 44226 0.74 0.659451
Target:  5'- gAGCGGGcgagCGCCGAgGCCGUCG-CGg -3'
miRNA:   3'- gUUGCUCua--GCGGCUgCGGUAGUuGC- -5'
25668 5' -52.5 NC_005337.1 + 19805 0.74 0.680272
Target:  5'- -cACGAGcacGUCGUCGACGUCGUCGGgGa -3'
miRNA:   3'- guUGCUC---UAGCGGCUGCGGUAGUUgC- -5'
25668 5' -52.5 NC_005337.1 + 104301 0.74 0.680272
Target:  5'- gGACGGGAUCacgcCCGACGUCAUCAuCa -3'
miRNA:   3'- gUUGCUCUAGc---GGCUGCGGUAGUuGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.