miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25669 3' -54.7 NC_005337.1 + 87723 0.66 0.929431
Target:  5'- uCGACUcGCuucuGAGgUUCAUCGuCACCGg -3'
miRNA:   3'- -GUUGGaCGu---CUCgGAGUAGCuGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 9993 0.66 0.929431
Target:  5'- uCGGCCacgGCAGGGuUCUCGUCGu--CCGg -3'
miRNA:   3'- -GUUGGa--CGUCUC-GGAGUAGCuguGGC- -5'
25669 3' -54.7 NC_005337.1 + 31143 0.66 0.929431
Target:  5'- gGACgCUGUAGAGCgCgcgCA-CGAUGCCGc -3'
miRNA:   3'- gUUG-GACGUCUCG-Ga--GUaGCUGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 127478 0.66 0.929431
Target:  5'- aCAGCggCUGCGauccGGCgggCAUCGACACCGg -3'
miRNA:   3'- -GUUG--GACGUc---UCGga-GUAGCUGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 55196 0.66 0.923997
Target:  5'- aCAugCUGCGcAGCUUCGUgGuggcGCGCCGc -3'
miRNA:   3'- -GUugGACGUcUCGGAGUAgC----UGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 80416 0.66 0.923997
Target:  5'- gAACCaGCAgGAGCCgUCcgCGGCGCg- -3'
miRNA:   3'- gUUGGaCGU-CUCGG-AGuaGCUGUGgc -5'
25669 3' -54.7 NC_005337.1 + 74733 0.66 0.923997
Target:  5'- uCGACgaGCGGAuguucgugcacGCCuUCAUCGACgACCu -3'
miRNA:   3'- -GUUGgaCGUCU-----------CGG-AGUAGCUG-UGGc -5'
25669 3' -54.7 NC_005337.1 + 29368 0.66 0.923997
Target:  5'- -cACCgGCgAGAGgCUCAgcuUCGAgCACCGg -3'
miRNA:   3'- guUGGaCG-UCUCgGAGU---AGCU-GUGGC- -5'
25669 3' -54.7 NC_005337.1 + 14999 0.66 0.920618
Target:  5'- gCAGCUUGguGAGCCggcgccgcaguuuguUCAUgugCGACAgCGg -3'
miRNA:   3'- -GUUGGACguCUCGG---------------AGUA---GCUGUgGC- -5'
25669 3' -54.7 NC_005337.1 + 29565 0.66 0.918315
Target:  5'- -cGCCgcgGCGGcGGcCCUCGUUGGCcuGCCGg -3'
miRNA:   3'- guUGGa--CGUC-UC-GGAGUAGCUG--UGGC- -5'
25669 3' -54.7 NC_005337.1 + 54301 0.66 0.918315
Target:  5'- -cACCacGCAGGGCgUgGUgGACACCa -3'
miRNA:   3'- guUGGa-CGUCUCGgAgUAgCUGUGGc -5'
25669 3' -54.7 NC_005337.1 + 90095 0.67 0.899788
Target:  5'- -cGCgUGCAGAGaCUCAUCGcCACg- -3'
miRNA:   3'- guUGgACGUCUCgGAGUAGCuGUGgc -5'
25669 3' -54.7 NC_005337.1 + 36792 0.67 0.899788
Target:  5'- gCGACCcGCuGGGCgUCAgccgCGuCGCCGg -3'
miRNA:   3'- -GUUGGaCGuCUCGgAGUa---GCuGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 12625 0.67 0.899788
Target:  5'- aCGACCUcGgGGGucGCCgcgUCGUCGAUGCCGu -3'
miRNA:   3'- -GUUGGA-CgUCU--CGG---AGUAGCUGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 100894 0.67 0.899788
Target:  5'- gCAGCCggUGCAGGGUCUgucgccCGUCGugAgCGg -3'
miRNA:   3'- -GUUGG--ACGUCUCGGA------GUAGCugUgGC- -5'
25669 3' -54.7 NC_005337.1 + 50975 0.67 0.886226
Target:  5'- uCGACCggGCGGGGCgCcgcgcguucgUCGUCGGC-CCGg -3'
miRNA:   3'- -GUUGGa-CGUCUCG-G----------AGUAGCUGuGGC- -5'
25669 3' -54.7 NC_005337.1 + 64228 0.67 0.886226
Target:  5'- gCGACggGCAGcGCCUCuuugCGGCGCUGc -3'
miRNA:   3'- -GUUGgaCGUCuCGGAGua--GCUGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 88474 0.67 0.886226
Target:  5'- uCAACCUGCAGuuccGGUC-CcUCGACGCgGu -3'
miRNA:   3'- -GUUGGACGUC----UCGGaGuAGCUGUGgC- -5'
25669 3' -54.7 NC_005337.1 + 125822 0.67 0.886226
Target:  5'- gGGCCUGCguguuccgGGAGCUg-AUCGcCGCCGg -3'
miRNA:   3'- gUUGGACG--------UCUCGGagUAGCuGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 103042 0.67 0.879092
Target:  5'- gCGACCUGCuGAuGCUgcugCAgcgCGGCAUCGu -3'
miRNA:   3'- -GUUGGACGuCU-CGGa---GUa--GCUGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.