miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25669 3' -54.7 NC_005337.1 + 44151 1.1 0.002918
Target:  5'- aCAACCUGCAGAGCCUCAUCGACACCGa -3'
miRNA:   3'- -GUUGGACGUCUCGGAGUAGCUGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 127824 0.79 0.290814
Target:  5'- uCAACgUGCGGAGCgUCGUCGACcgcacGCCGc -3'
miRNA:   3'- -GUUGgACGUCUCGgAGUAGCUG-----UGGC- -5'
25669 3' -54.7 NC_005337.1 + 116533 0.78 0.327009
Target:  5'- gGAgCUGCAGAGCgUgAUCGugACCGa -3'
miRNA:   3'- gUUgGACGUCUCGgAgUAGCugUGGC- -5'
25669 3' -54.7 NC_005337.1 + 67171 0.77 0.366437
Target:  5'- gCAACCUGCGcGAG-CUCA-CGGCGCCGg -3'
miRNA:   3'- -GUUGGACGU-CUCgGAGUaGCUGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 101548 0.76 0.426895
Target:  5'- gGAgCUGCAGAGCCUCAgcgugUCG-CGCCc -3'
miRNA:   3'- gUUgGACGUCUCGGAGU-----AGCuGUGGc -5'
25669 3' -54.7 NC_005337.1 + 38895 0.74 0.522577
Target:  5'- -uACCUGCGGucgcugGGCUUCGUCGGCACg- -3'
miRNA:   3'- guUGGACGUC------UCGGAGUAGCUGUGgc -5'
25669 3' -54.7 NC_005337.1 + 34717 0.74 0.53263
Target:  5'- gCAGCC-GCAGGGCCUCcucgcgcgagcaGUCGgcggcGCACCGg -3'
miRNA:   3'- -GUUGGaCGUCUCGGAG------------UAGC-----UGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 84382 0.72 0.614989
Target:  5'- cCAGCCUGCcccAGAGCUgcuaCAUgGACAUCGu -3'
miRNA:   3'- -GUUGGACG---UCUCGGa---GUAgCUGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 54198 0.72 0.625423
Target:  5'- aUAACUccgUGguGAGCCUCGUgGGCGCgGa -3'
miRNA:   3'- -GUUGG---ACguCUCGGAGUAgCUGUGgC- -5'
25669 3' -54.7 NC_005337.1 + 95537 0.71 0.6775
Target:  5'- -cACCUGCGaGGUCUUGcCGACGCCGg -3'
miRNA:   3'- guUGGACGUcUCGGAGUaGCUGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 89235 0.7 0.718516
Target:  5'- cCAGCUUGCGGAGCaUCGUgCGGCAguCCa -3'
miRNA:   3'- -GUUGGACGUCUCGgAGUA-GCUGU--GGc -5'
25669 3' -54.7 NC_005337.1 + 130266 0.7 0.72256
Target:  5'- gAGCCUGCGGGacGuCCUCGUCagcgcgaccgucccuGACACCa -3'
miRNA:   3'- gUUGGACGUCU--C-GGAGUAG---------------CUGUGGc -5'
25669 3' -54.7 NC_005337.1 + 2147 0.7 0.728602
Target:  5'- cCAGCUcgcaguUGCGGAGCCUgccgcgCA-CGGCGCCGa -3'
miRNA:   3'- -GUUGG------ACGUCUCGGA------GUaGCUGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 63522 0.7 0.738601
Target:  5'- cCGACgUGCAG-GCCUCGggcgugCGGCGCuCGu -3'
miRNA:   3'- -GUUGgACGUCuCGGAGUa-----GCUGUG-GC- -5'
25669 3' -54.7 NC_005337.1 + 70802 0.7 0.738601
Target:  5'- gCGGCggCUGguGAGCgUCAUCGACgacauccaGCCGa -3'
miRNA:   3'- -GUUG--GACguCUCGgAGUAGCUG--------UGGC- -5'
25669 3' -54.7 NC_005337.1 + 62431 0.7 0.7583
Target:  5'- -uGCCggGCAccGUCUCAUCGugGCCGu -3'
miRNA:   3'- guUGGa-CGUcuCGGAGUAGCugUGGC- -5'
25669 3' -54.7 NC_005337.1 + 52051 0.7 0.76798
Target:  5'- gGACCUGCgGGAGCugguucggCUCuUCGAcCGCCGg -3'
miRNA:   3'- gUUGGACG-UCUCG--------GAGuAGCU-GUGGC- -5'
25669 3' -54.7 NC_005337.1 + 10250 0.7 0.76798
Target:  5'- gCGGCCUucGCGGGgcGCCUcCAUCGGCGgCGg -3'
miRNA:   3'- -GUUGGA--CGUCU--CGGA-GUAGCUGUgGC- -5'
25669 3' -54.7 NC_005337.1 + 107088 0.69 0.777534
Target:  5'- -uGCCgcugugcGCGGAGCCUCAagacgucgucuUCGACGCgGc -3'
miRNA:   3'- guUGGa------CGUCUCGGAGU-----------AGCUGUGgC- -5'
25669 3' -54.7 NC_005337.1 + 56394 0.69 0.777534
Target:  5'- ---aCUGC--AGCCUCuUCGGCACCGu -3'
miRNA:   3'- guugGACGucUCGGAGuAGCUGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.