miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25669 3' -54.7 NC_005337.1 + 2147 0.7 0.728602
Target:  5'- cCAGCUcgcaguUGCGGAGCCUgccgcgCA-CGGCGCCGa -3'
miRNA:   3'- -GUUGG------ACGUCUCGGA------GUaGCUGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 9993 0.66 0.929431
Target:  5'- uCGGCCacgGCAGGGuUCUCGUCGu--CCGg -3'
miRNA:   3'- -GUUGGa--CGUCUC-GGAGUAGCuguGGC- -5'
25669 3' -54.7 NC_005337.1 + 10250 0.7 0.76798
Target:  5'- gCGGCCUucGCGGGgcGCCUcCAUCGGCGgCGg -3'
miRNA:   3'- -GUUGGA--CGUCU--CGGA-GUAGCUGUgGC- -5'
25669 3' -54.7 NC_005337.1 + 11843 0.67 0.87173
Target:  5'- uCGGCgUGCAuGuGCCgCAUCGGCGCgGa -3'
miRNA:   3'- -GUUGgACGU-CuCGGaGUAGCUGUGgC- -5'
25669 3' -54.7 NC_005337.1 + 12625 0.67 0.899788
Target:  5'- aCGACCUcGgGGGucGCCgcgUCGUCGAUGCCGu -3'
miRNA:   3'- -GUUGGA-CgUCU--CGG---AGUAGCUGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 14999 0.66 0.920618
Target:  5'- gCAGCUUGguGAGCCggcgccgcaguuuguUCAUgugCGACAgCGg -3'
miRNA:   3'- -GUUGGACguCUCGG---------------AGUA---GCUGUgGC- -5'
25669 3' -54.7 NC_005337.1 + 16496 0.67 0.879092
Target:  5'- aCAugCUGgAGAGCCUCuUC-AC-CCGg -3'
miRNA:   3'- -GUugGACgUCUCGGAGuAGcUGuGGC- -5'
25669 3' -54.7 NC_005337.1 + 20613 0.68 0.831692
Target:  5'- -cGCCUGUc--GCUUCAUCGuCGCCGg -3'
miRNA:   3'- guUGGACGucuCGGAGUAGCuGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 21434 0.67 0.87173
Target:  5'- cCAGCUcGCGGAGCUUCGccUCGucCAUCGa -3'
miRNA:   3'- -GUUGGaCGUCUCGGAGU--AGCu-GUGGC- -5'
25669 3' -54.7 NC_005337.1 + 21767 0.68 0.864144
Target:  5'- gCAGCgCUGCGaGGUCU--UCGACGCCGu -3'
miRNA:   3'- -GUUG-GACGUcUCGGAguAGCUGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 29368 0.66 0.923997
Target:  5'- -cACCgGCgAGAGgCUCAgcuUCGAgCACCGg -3'
miRNA:   3'- guUGGaCG-UCUCgGAGU---AGCU-GUGGC- -5'
25669 3' -54.7 NC_005337.1 + 29565 0.66 0.918315
Target:  5'- -cGCCgcgGCGGcGGcCCUCGUUGGCcuGCCGg -3'
miRNA:   3'- guUGGa--CGUC-UC-GGAGUAGCUG--UGGC- -5'
25669 3' -54.7 NC_005337.1 + 31143 0.66 0.929431
Target:  5'- gGACgCUGUAGAGCgCgcgCA-CGAUGCCGc -3'
miRNA:   3'- gUUG-GACGUCUCG-Ga--GUaGCUGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 34717 0.74 0.53263
Target:  5'- gCAGCC-GCAGGGCCUCcucgcgcgagcaGUCGgcggcGCACCGg -3'
miRNA:   3'- -GUUGGaCGUCUCGGAG------------UAGC-----UGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 36792 0.67 0.899788
Target:  5'- gCGACCcGCuGGGCgUCAgccgCGuCGCCGg -3'
miRNA:   3'- -GUUGGaCGuCUCGgAGUa---GCuGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 38895 0.74 0.522577
Target:  5'- -uACCUGCGGucgcugGGCUUCGUCGGCACg- -3'
miRNA:   3'- guUGGACGUC------UCGGAGUAGCUGUGgc -5'
25669 3' -54.7 NC_005337.1 + 44151 1.1 0.002918
Target:  5'- aCAACCUGCAGAGCCUCAUCGACACCGa -3'
miRNA:   3'- -GUUGGACGUCUCGGAGUAGCUGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 50975 0.67 0.886226
Target:  5'- uCGACCggGCGGGGCgCcgcgcguucgUCGUCGGC-CCGg -3'
miRNA:   3'- -GUUGGa-CGUCUCG-G----------AGUAGCUGuGGC- -5'
25669 3' -54.7 NC_005337.1 + 52051 0.7 0.76798
Target:  5'- gGACCUGCgGGAGCugguucggCUCuUCGAcCGCCGg -3'
miRNA:   3'- gUUGGACG-UCUCG--------GAGuAGCU-GUGGC- -5'
25669 3' -54.7 NC_005337.1 + 54198 0.72 0.625423
Target:  5'- aUAACUccgUGguGAGCCUCGUgGGCGCgGa -3'
miRNA:   3'- -GUUGG---ACguCUCGGAGUAgCUGUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.