miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25669 3' -54.7 NC_005337.1 + 36792 0.67 0.899788
Target:  5'- gCGACCcGCuGGGCgUCAgccgCGuCGCCGg -3'
miRNA:   3'- -GUUGGaCGuCUCGgAGUa---GCuGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 21767 0.68 0.864144
Target:  5'- gCAGCgCUGCGaGGUCU--UCGACGCCGu -3'
miRNA:   3'- -GUUG-GACGUcUCGGAguAGCUGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 122616 0.67 0.87173
Target:  5'- aGACCUGCuGGAGCgccugUUCcgCGAgCACCGc -3'
miRNA:   3'- gUUGGACG-UCUCG-----GAGuaGCU-GUGGC- -5'
25669 3' -54.7 NC_005337.1 + 21434 0.67 0.87173
Target:  5'- cCAGCUcGCGGAGCUUCGccUCGucCAUCGa -3'
miRNA:   3'- -GUUGGaCGUCUCGGAGU--AGCu-GUGGC- -5'
25669 3' -54.7 NC_005337.1 + 16496 0.67 0.879092
Target:  5'- aCAugCUGgAGAGCCUCuUC-AC-CCGg -3'
miRNA:   3'- -GUugGACgUCUCGGAGuAGcUGuGGC- -5'
25669 3' -54.7 NC_005337.1 + 56123 0.67 0.879092
Target:  5'- gGACCUGCGucccGAcGCCUCGcUCGugAaCCGc -3'
miRNA:   3'- gUUGGACGU----CU-CGGAGU-AGCugU-GGC- -5'
25669 3' -54.7 NC_005337.1 + 64228 0.67 0.886226
Target:  5'- gCGACggGCAGcGCCUCuuugCGGCGCUGc -3'
miRNA:   3'- -GUUGgaCGUCuCGGAGua--GCUGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 88474 0.67 0.886226
Target:  5'- uCAACCUGCAGuuccGGUC-CcUCGACGCgGu -3'
miRNA:   3'- -GUUGGACGUC----UCGGaGuAGCUGUGgC- -5'
25669 3' -54.7 NC_005337.1 + 125822 0.67 0.886226
Target:  5'- gGGCCUGCguguuccgGGAGCUg-AUCGcCGCCGg -3'
miRNA:   3'- gUUGGACG--------UCUCGGagUAGCuGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 120926 0.68 0.858704
Target:  5'- gGACCUGCaccucaaGGAGCggggguggcugauggCgagCAUCGACGCCa -3'
miRNA:   3'- gUUGGACG-------UCUCG---------------Ga--GUAGCUGUGGc -5'
25669 3' -54.7 NC_005337.1 + 20613 0.68 0.831692
Target:  5'- -cGCCUGUc--GCUUCAUCGuCGCCGg -3'
miRNA:   3'- guUGGACGucuCGGAGUAGCuGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 132348 0.68 0.823088
Target:  5'- aGACCUGCAGAcGCUagaCAUaggCGACugCGg -3'
miRNA:   3'- gUUGGACGUCU-CGGa--GUA---GCUGugGC- -5'
25669 3' -54.7 NC_005337.1 + 67171 0.77 0.366437
Target:  5'- gCAACCUGCGcGAG-CUCA-CGGCGCCGg -3'
miRNA:   3'- -GUUGGACGU-CUCgGAGUaGCUGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 38895 0.74 0.522577
Target:  5'- -uACCUGCGGucgcugGGCUUCGUCGGCACg- -3'
miRNA:   3'- guUGGACGUC------UCGGAGUAGCUGUGgc -5'
25669 3' -54.7 NC_005337.1 + 130266 0.7 0.72256
Target:  5'- gAGCCUGCGGGacGuCCUCGUCagcgcgaccgucccuGACACCa -3'
miRNA:   3'- gUUGGACGUCU--C-GGAGUAG---------------CUGUGGc -5'
25669 3' -54.7 NC_005337.1 + 70802 0.7 0.738601
Target:  5'- gCGGCggCUGguGAGCgUCAUCGACgacauccaGCCGa -3'
miRNA:   3'- -GUUG--GACguCUCGgAGUAGCUG--------UGGC- -5'
25669 3' -54.7 NC_005337.1 + 63522 0.7 0.738601
Target:  5'- cCGACgUGCAG-GCCUCGggcgugCGGCGCuCGu -3'
miRNA:   3'- -GUUGgACGUCuCGGAGUa-----GCUGUG-GC- -5'
25669 3' -54.7 NC_005337.1 + 52051 0.7 0.76798
Target:  5'- gGACCUGCgGGAGCugguucggCUCuUCGAcCGCCGg -3'
miRNA:   3'- gUUGGACG-UCUCG--------GAGuAGCU-GUGGC- -5'
25669 3' -54.7 NC_005337.1 + 132096 0.69 0.786954
Target:  5'- -cGCCUGC---GCCgugcgCGUCGGCGCCGu -3'
miRNA:   3'- guUGGACGucuCGGa----GUAGCUGUGGC- -5'
25669 3' -54.7 NC_005337.1 + 85823 0.69 0.796227
Target:  5'- -cGCCUGUAGuugcaguGCUUCAUCaGCGCCa -3'
miRNA:   3'- guUGGACGUCu------CGGAGUAGcUGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.