miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25669 5' -58.8 NC_005337.1 + 7965 0.66 0.742518
Target:  5'- --gGGUGAGGGguUCCgu-UGGCCAc -3'
miRNA:   3'- uggCCGCUCUCguAGGacuACCGGUa -5'
25669 5' -58.8 NC_005337.1 + 19107 0.66 0.742518
Target:  5'- cGCCGGCGuccgcGGGCGccggcaucUCCaGGUGGUCGa -3'
miRNA:   3'- -UGGCCGCu----CUCGU--------AGGaCUACCGGUa -5'
25669 5' -58.8 NC_005337.1 + 67914 0.66 0.732691
Target:  5'- aGCCGGaCGGGAGUG-CCgcGGUGGUCGc -3'
miRNA:   3'- -UGGCC-GCUCUCGUaGGa-CUACCGGUa -5'
25669 5' -58.8 NC_005337.1 + 42430 0.66 0.732691
Target:  5'- uUCGGCGuGAGCuUCCg---GGCCGa -3'
miRNA:   3'- uGGCCGCuCUCGuAGGacuaCCGGUa -5'
25669 5' -58.8 NC_005337.1 + 48563 0.66 0.732691
Target:  5'- aGCCGuguucCGGGAGC-UUCUGcUGGCCGUg -3'
miRNA:   3'- -UGGCc----GCUCUCGuAGGACuACCGGUA- -5'
25669 5' -58.8 NC_005337.1 + 10676 0.66 0.722775
Target:  5'- gGCCGGCGGcGGGUucUCCUcGAaggcGGCCAg -3'
miRNA:   3'- -UGGCCGCU-CUCGu-AGGA-CUa---CCGGUa -5'
25669 5' -58.8 NC_005337.1 + 18864 0.66 0.71278
Target:  5'- gGCCGGCGAGAcgGCGUCCUcgGAgcgGaGCg-- -3'
miRNA:   3'- -UGGCCGCUCU--CGUAGGA--CUa--C-CGgua -5'
25669 5' -58.8 NC_005337.1 + 985 0.66 0.702716
Target:  5'- gGCUGGCgcggcgcgcgGAGGGCGggcgucgCCUGGaGGCCGUc -3'
miRNA:   3'- -UGGCCG----------CUCUCGUa------GGACUaCCGGUA- -5'
25669 5' -58.8 NC_005337.1 + 985 0.66 0.702716
Target:  5'- gGCUGGCgcggcgcgcgGAGGGCGggcgucgCCUGGaGGCCGUc -3'
miRNA:   3'- -UGGCCG----------CUCUCGUa------GGACUaCCGGUA- -5'
25669 5' -58.8 NC_005337.1 + 40530 0.67 0.692591
Target:  5'- uACCGGCGAGgaGGCuugcgccggcggGUCgCUGGaGGCCGc -3'
miRNA:   3'- -UGGCCGCUC--UCG------------UAG-GACUaCCGGUa -5'
25669 5' -58.8 NC_005337.1 + 91221 0.67 0.692591
Target:  5'- cGCCGGUGgucAGcGCGUCCaugUGGUcGGCCAa -3'
miRNA:   3'- -UGGCCGC---UCuCGUAGG---ACUA-CCGGUa -5'
25669 5' -58.8 NC_005337.1 + 19709 0.67 0.672198
Target:  5'- uGCgGGCGGGGGCGguaagUCCUGcuccGGCCc- -3'
miRNA:   3'- -UGgCCGCUCUCGU-----AGGACua--CCGGua -5'
25669 5' -58.8 NC_005337.1 + 93279 0.67 0.672198
Target:  5'- gGCCGG-GGGuGCGUcggcgCCUGGUGGCgGUc -3'
miRNA:   3'- -UGGCCgCUCuCGUA-----GGACUACCGgUA- -5'
25669 5' -58.8 NC_005337.1 + 80331 0.67 0.661947
Target:  5'- gGCacaGGCGcGAGCAgaacUCCccGAUGGCCGc -3'
miRNA:   3'- -UGg--CCGCuCUCGU----AGGa-CUACCGGUa -5'
25669 5' -58.8 NC_005337.1 + 99421 0.67 0.651673
Target:  5'- -gCGGCGGGuGCGUgCUGAgccgcggcgugGGCCAc -3'
miRNA:   3'- ugGCCGCUCuCGUAgGACUa----------CCGGUa -5'
25669 5' -58.8 NC_005337.1 + 1063 0.68 0.589977
Target:  5'- gGCCGGCGGGGGCGgaCUGcgGGaCGg -3'
miRNA:   3'- -UGGCCGCUCUCGUagGACuaCCgGUa -5'
25669 5' -58.8 NC_005337.1 + 1063 0.68 0.589977
Target:  5'- gGCCGGCGGGGGCGgaCUGcgGGaCGg -3'
miRNA:   3'- -UGGCCGCUCUCGUagGACuaCCgGUa -5'
25669 5' -58.8 NC_005337.1 + 115017 0.69 0.566536
Target:  5'- aGCCGcGCGgacaAGAGCAUCCUcugccccugccaggGcAUGGCCGUc -3'
miRNA:   3'- -UGGC-CGC----UCUCGUAGGA--------------C-UACCGGUA- -5'
25669 5' -58.8 NC_005337.1 + 127895 0.69 0.539336
Target:  5'- cGCCGGCGAGcGCGUgCg---GGCCGa -3'
miRNA:   3'- -UGGCCGCUCuCGUAgGacuaCCGGUa -5'
25669 5' -58.8 NC_005337.1 + 38150 0.69 0.539336
Target:  5'- cACCGGCcgcGGCAUCCUGcgcGGCCGc -3'
miRNA:   3'- -UGGCCGcucUCGUAGGACua-CCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.