miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25669 5' -58.8 NC_005337.1 + 44185 1.06 0.001883
Target:  5'- gACCGGCGAGAGCAUCCUGAUGGCCAUg -3'
miRNA:   3'- -UGGCCGCUCUCGUAGGACUACCGGUA- -5'
25669 5' -58.8 NC_005337.1 + 34548 0.82 0.090577
Target:  5'- aGCCGGCggGAGAGCGUCCUguccgcgacGAUGGCCGc -3'
miRNA:   3'- -UGGCCG--CUCUCGUAGGA---------CUACCGGUa -5'
25669 5' -58.8 NC_005337.1 + 66915 0.81 0.098111
Target:  5'- uUCGGCGAGAucGCGUCCaUGGUGGCCAc -3'
miRNA:   3'- uGGCCGCUCU--CGUAGG-ACUACCGGUa -5'
25669 5' -58.8 NC_005337.1 + 132510 0.73 0.349849
Target:  5'- gGCCGGCGGGAuGCcgcccuggucgGUCCUGcugucgGUGGCCGc -3'
miRNA:   3'- -UGGCCGCUCU-CG-----------UAGGAC------UACCGGUa -5'
25669 5' -58.8 NC_005337.1 + 77265 0.72 0.373918
Target:  5'- aGCCGGCGGGAGUacguGUCCacgaacccGUGGCCGa -3'
miRNA:   3'- -UGGCCGCUCUCG----UAGGac------UACCGGUa -5'
25669 5' -58.8 NC_005337.1 + 99468 0.72 0.390576
Target:  5'- cGCgUGcGCGAGGGCGUCUUcGUGGCCGUg -3'
miRNA:   3'- -UG-GC-CGCUCUCGUAGGAcUACCGGUA- -5'
25669 5' -58.8 NC_005337.1 + 39611 0.71 0.443353
Target:  5'- gGCgGGCGGGAGCGgaucgUCUcGcgGGCCAUg -3'
miRNA:   3'- -UGgCCGCUCUCGUa----GGA-CuaCCGGUA- -5'
25669 5' -58.8 NC_005337.1 + 24201 0.7 0.471203
Target:  5'- uACCGGCGAGGcgcGCGUCgaGGUggagcugcccccGGCCGUg -3'
miRNA:   3'- -UGGCCGCUCU---CGUAGgaCUA------------CCGGUA- -5'
25669 5' -58.8 NC_005337.1 + 83902 0.7 0.480683
Target:  5'- cGCCGGguaCGGGGGCGgcgCCUGcUGGCCc- -3'
miRNA:   3'- -UGGCC---GCUCUCGUa--GGACuACCGGua -5'
25669 5' -58.8 NC_005337.1 + 79157 0.7 0.490254
Target:  5'- cGCCGGaCGAGGGCAccUCCacGAUcucGGCCGUc -3'
miRNA:   3'- -UGGCC-GCUCUCGU--AGGa-CUA---CCGGUA- -5'
25669 5' -58.8 NC_005337.1 + 97190 0.7 0.490254
Target:  5'- uCCGGCGAGcucgaccGCG-CCaUGGUGGCCAUc -3'
miRNA:   3'- uGGCCGCUCu------CGUaGG-ACUACCGGUA- -5'
25669 5' -58.8 NC_005337.1 + 10177 0.7 0.499914
Target:  5'- uGCCGGCGAGcGCGaagaCCUGgcGGCUGUc -3'
miRNA:   3'- -UGGCCGCUCuCGUa---GGACuaCCGGUA- -5'
25669 5' -58.8 NC_005337.1 + 18664 0.69 0.529373
Target:  5'- cGCCGGCGGGcGgAUCC-GAgGGCCGg -3'
miRNA:   3'- -UGGCCGCUCuCgUAGGaCUaCCGGUa -5'
25669 5' -58.8 NC_005337.1 + 98525 0.69 0.529373
Target:  5'- gGCCGGgGGGAGCccgCCcGAcGGCCGc -3'
miRNA:   3'- -UGGCCgCUCUCGua-GGaCUaCCGGUa -5'
25669 5' -58.8 NC_005337.1 + 127895 0.69 0.539336
Target:  5'- cGCCGGCGAGcGCGUgCg---GGCCGa -3'
miRNA:   3'- -UGGCCGCUCuCGUAgGacuaCCGGUa -5'
25669 5' -58.8 NC_005337.1 + 38150 0.69 0.539336
Target:  5'- cACCGGCcgcGGCAUCCUGcgcGGCCGc -3'
miRNA:   3'- -UGGCCGcucUCGUAGGACua-CCGGUa -5'
25669 5' -58.8 NC_005337.1 + 115017 0.69 0.566536
Target:  5'- aGCCGcGCGgacaAGAGCAUCCUcugccccugccaggGcAUGGCCGUc -3'
miRNA:   3'- -UGGC-CGC----UCUCGUAGGA--------------C-UACCGGUA- -5'
25669 5' -58.8 NC_005337.1 + 1063 0.68 0.589977
Target:  5'- gGCCGGCGGGGGCGgaCUGcgGGaCGg -3'
miRNA:   3'- -UGGCCGCUCUCGUagGACuaCCgGUa -5'
25669 5' -58.8 NC_005337.1 + 1063 0.68 0.589977
Target:  5'- gGCCGGCGGGGGCGgaCUGcgGGaCGg -3'
miRNA:   3'- -UGGCCGCUCUCGUagGACuaCCgGUa -5'
25669 5' -58.8 NC_005337.1 + 99421 0.67 0.651673
Target:  5'- -gCGGCGGGuGCGUgCUGAgccgcggcgugGGCCAc -3'
miRNA:   3'- ugGCCGCUCuCGUAgGACUa----------CCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.