miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25675 3' -55.4 NC_005337.1 + 9664 0.66 0.890808
Target:  5'- ----cCGCGCGUGAGCUCgguaacgaaaUGggGCUu -3'
miRNA:   3'- ggcaaGUGCGCGCUCGAGg---------ACuuCGA- -5'
25675 3' -55.4 NC_005337.1 + 9718 0.66 0.890808
Target:  5'- gCGgccUCGCGCaGCGGGgaggagagCCUGAAGCa -3'
miRNA:   3'- gGCa--AGUGCG-CGCUCga------GGACUUCGa -5'
25675 3' -55.4 NC_005337.1 + 70685 0.66 0.890808
Target:  5'- cCUGgcCACGgGCGAGUUCCUcaccGGCg -3'
miRNA:   3'- -GGCaaGUGCgCGCUCGAGGAcu--UCGa -5'
25675 3' -55.4 NC_005337.1 + 122287 0.66 0.890808
Target:  5'- aCCGgg-ACGCGgagGAGCUCCgcGAGGCg -3'
miRNA:   3'- -GGCaagUGCGCg--CUCGAGGa-CUUCGa -5'
25675 3' -55.4 NC_005337.1 + 102311 0.67 0.883909
Target:  5'- -aGUcCAUGCGCcugGGGCUCCgcgugGAGGCc -3'
miRNA:   3'- ggCAaGUGCGCG---CUCGAGGa----CUUCGa -5'
25675 3' -55.4 NC_005337.1 + 18138 0.67 0.883909
Target:  5'- cUCGUUCggcccccagGCGCGC-AGCUCCacGAGCUc -3'
miRNA:   3'- -GGCAAG---------UGCGCGcUCGAGGacUUCGA- -5'
25675 3' -55.4 NC_005337.1 + 11415 0.67 0.883909
Target:  5'- -gGUUCcgcagGCGCGCGGGCUCUcc-AGCa -3'
miRNA:   3'- ggCAAG-----UGCGCGCUCGAGGacuUCGa -5'
25675 3' -55.4 NC_005337.1 + 42540 0.67 0.876782
Target:  5'- gCCGgaCGCGCuGCGGGCg-CUGGugcGGCUg -3'
miRNA:   3'- -GGCaaGUGCG-CGCUCGagGACU---UCGA- -5'
25675 3' -55.4 NC_005337.1 + 10635 0.67 0.876782
Target:  5'- aCCG-UCGCGcCGCugcaGAGCUCCacGAGCg -3'
miRNA:   3'- -GGCaAGUGC-GCG----CUCGAGGacUUCGa -5'
25675 3' -55.4 NC_005337.1 + 124400 0.67 0.876782
Target:  5'- gCGUUCAacggucUGCGCGAGauggUCCUG-GGCa -3'
miRNA:   3'- gGCAAGU------GCGCGCUCg---AGGACuUCGa -5'
25675 3' -55.4 NC_005337.1 + 132040 0.67 0.869434
Target:  5'- gCGUUCcuCGCGCG-GUUCCUGcgcGCg -3'
miRNA:   3'- gGCAAGu-GCGCGCuCGAGGACuu-CGa -5'
25675 3' -55.4 NC_005337.1 + 51878 0.67 0.861869
Target:  5'- cUCGUUCGuCGCG-GGGCUCCcgacgacGAGGCc -3'
miRNA:   3'- -GGCAAGU-GCGCgCUCGAGGa------CUUCGa -5'
25675 3' -55.4 NC_005337.1 + 79704 0.68 0.846113
Target:  5'- gUCGUUCAgcuCGCGCGAGaagCCgGAcAGCUc -3'
miRNA:   3'- -GGCAAGU---GCGCGCUCga-GGaCU-UCGA- -5'
25675 3' -55.4 NC_005337.1 + 60474 0.68 0.837936
Target:  5'- gCGgaagUCGaGCGUGAGCUCgUGcGGCUg -3'
miRNA:   3'- gGCa---AGUgCGCGCUCGAGgACuUCGA- -5'
25675 3' -55.4 NC_005337.1 + 30247 0.68 0.837936
Target:  5'- aCGUUC-CGCGCGAuggcgucgcccuGCUCCagGAAgGCg -3'
miRNA:   3'- gGCAAGuGCGCGCU------------CGAGGa-CUU-CGa -5'
25675 3' -55.4 NC_005337.1 + 79435 0.68 0.832937
Target:  5'- gCCGggCGCGCGUGcauGUUCUucaccauguacccgaUGAAGCUg -3'
miRNA:   3'- -GGCaaGUGCGCGCu--CGAGG---------------ACUUCGA- -5'
25675 3' -55.4 NC_005337.1 + 95125 0.68 0.829568
Target:  5'- aUGUcCGCGCGCGAGUUCUgcaucaccAGGCUg -3'
miRNA:   3'- gGCAaGUGCGCGCUCGAGGac------UUCGA- -5'
25675 3' -55.4 NC_005337.1 + 48163 0.68 0.829568
Target:  5'- gCCGgacuccUCGCGCGCGGaggcGCUgCUGcggGAGCUg -3'
miRNA:   3'- -GGCa-----AGUGCGCGCU----CGAgGAC---UUCGA- -5'
25675 3' -55.4 NC_005337.1 + 130710 0.68 0.829568
Target:  5'- cCCGUcCGCGUGCgugGAGCUCgUcGAGCg -3'
miRNA:   3'- -GGCAaGUGCGCG---CUCGAGgAcUUCGa -5'
25675 3' -55.4 NC_005337.1 + 47961 0.68 0.829568
Target:  5'- aUGUUCGCGCGCGAGUgcggCgCgGAcGCg -3'
miRNA:   3'- gGCAAGUGCGCGCUCGa---G-GaCUuCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.