miRNA display CGI


Results 21 - 40 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25675 5' -59.3 NC_005337.1 + 1107 0.66 0.764483
Target:  5'- gCAGCgccgccgcCGGGaGCagccgcaGCACGCGCGCGa- -3'
miRNA:   3'- gGUCGaa------GCUC-CG-------CGUGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 27114 0.66 0.756071
Target:  5'- uCCAGCagcCGcuuGGC-CACGCGCagcaGCGUGa -3'
miRNA:   3'- -GGUCGaa-GCu--CCGcGUGCGCG----CGCAC- -5'
25675 5' -59.3 NC_005337.1 + 3383 0.66 0.756071
Target:  5'- gCGGCcaUGAGGUGCA-GCG-GCGUGu -3'
miRNA:   3'- gGUCGaaGCUCCGCGUgCGCgCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 37686 0.66 0.756071
Target:  5'- uUCAcGCccgUGuGGaCGCcCGCGCGCGUGa -3'
miRNA:   3'- -GGU-CGaa-GCuCC-GCGuGCGCGCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 109369 0.66 0.756071
Target:  5'- gCAGUacacgGAGGCggGCACGCGCGgGUc -3'
miRNA:   3'- gGUCGaag--CUCCG--CGUGCGCGCgCAc -5'
25675 5' -59.3 NC_005337.1 + 34569 0.66 0.756071
Target:  5'- uCC-GCgaCGAuGGcCGCGCGCaGCGCGUc -3'
miRNA:   3'- -GGuCGaaGCU-CC-GCGUGCG-CGCGCAc -5'
25675 5' -59.3 NC_005337.1 + 128531 0.66 0.756071
Target:  5'- aCAGCUUCccgauGGGUGCuACG-GCcGCGUGg -3'
miRNA:   3'- gGUCGAAGc----UCCGCG-UGCgCG-CGCAC- -5'
25675 5' -59.3 NC_005337.1 + 10232 0.66 0.756071
Target:  5'- uCCAGCcgCGgcAGGCGCGCGgccuuCGCGgGg- -3'
miRNA:   3'- -GGUCGaaGC--UCCGCGUGC-----GCGCgCac -5'
25675 5' -59.3 NC_005337.1 + 127876 0.66 0.756071
Target:  5'- aCAGUcUgGuGGCGCGCGgcgccggcgaGCGCGUGc -3'
miRNA:   3'- gGUCGaAgCuCCGCGUGCg---------CGCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 125498 0.66 0.756071
Target:  5'- cUCGGCaUCGAGGUGgAgGuCGUGCGg- -3'
miRNA:   3'- -GGUCGaAGCUCCGCgUgC-GCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 75619 0.66 0.756071
Target:  5'- -gAGCgcCGAGGaCGCGCGgGcCGuCGUGa -3'
miRNA:   3'- ggUCGaaGCUCC-GCGUGCgC-GC-GCAC- -5'
25675 5' -59.3 NC_005337.1 + 75385 0.66 0.753248
Target:  5'- aCCAGCgUCGAcgucuuGGcCGCGCggaugcugcggacgGCGCGCGa- -3'
miRNA:   3'- -GGUCGaAGCU------CC-GCGUG--------------CGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 61167 0.66 0.746625
Target:  5'- aCGGUgUCGAaguccuccuuGGUGCACaCGCGCGUc -3'
miRNA:   3'- gGUCGaAGCU----------CCGCGUGcGCGCGCAc -5'
25675 5' -59.3 NC_005337.1 + 86661 0.66 0.746625
Target:  5'- -uGGCUUucagCGcGGC-CGCGCGCGCGg- -3'
miRNA:   3'- ggUCGAA----GCuCCGcGUGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 94327 0.66 0.746625
Target:  5'- uCgAGCgcccgcgCGAGGCGCcCGCcGCGCa-- -3'
miRNA:   3'- -GgUCGaa-----GCUCCGCGuGCG-CGCGcac -5'
25675 5' -59.3 NC_005337.1 + 80198 0.66 0.746625
Target:  5'- uCCAGCUcgcgcgucucgUUGAuGaGCGCGCGCaCGCGg- -3'
miRNA:   3'- -GGUCGA-----------AGCU-C-CGCGUGCGcGCGCac -5'
25675 5' -59.3 NC_005337.1 + 47610 0.66 0.746625
Target:  5'- gCCGaCUUCGAGGCGgACaacaagcgucuGCGCGCc-- -3'
miRNA:   3'- -GGUcGAAGCUCCGCgUG-----------CGCGCGcac -5'
25675 5' -59.3 NC_005337.1 + 97742 0.66 0.746625
Target:  5'- cCCAGCcgcCGGGGaCGCcCGCG-GCGUu -3'
miRNA:   3'- -GGUCGaa-GCUCC-GCGuGCGCgCGCAc -5'
25675 5' -59.3 NC_005337.1 + 124907 0.66 0.746625
Target:  5'- uCUGGC-UCGAacGCGCA-GCGCGCGUc -3'
miRNA:   3'- -GGUCGaAGCUc-CGCGUgCGCGCGCAc -5'
25675 5' -59.3 NC_005337.1 + 88118 0.66 0.746625
Target:  5'- aCAGCga-GAGGUagaGCACGCGCuCGa- -3'
miRNA:   3'- gGUCGaagCUCCG---CGUGCGCGcGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.