miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 3' -57.3 NC_005337.1 + 41924 0.66 0.887372
Target:  5'- aUCGU-CCUCGUCCU--CG-UCGUCGGa -3'
miRNA:   3'- -AGCAuGGAGUAGGGccGCuGGCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 70699 0.66 0.887372
Target:  5'- -aGUuCCUCA--CCGGCGACCG-CGc -3'
miRNA:   3'- agCAuGGAGUagGGCCGCUGGCaGCc -5'
25676 3' -57.3 NC_005337.1 + 9642 0.66 0.880579
Target:  5'- gCGUACCUCGUCuCCGGaGGCgCG-Ca- -3'
miRNA:   3'- aGCAUGGAGUAG-GGCCgCUG-GCaGcc -5'
25676 3' -57.3 NC_005337.1 + 59376 0.66 0.880579
Target:  5'- cCGcGCCaUCAcgccCCCGGCGuCCucgGUCGGg -3'
miRNA:   3'- aGCaUGG-AGUa---GGGCCGCuGG---CAGCC- -5'
25676 3' -57.3 NC_005337.1 + 127414 0.66 0.880579
Target:  5'- aCGcUGCUgcacCA-CCUGGCGACCGUgccgCGGg -3'
miRNA:   3'- aGC-AUGGa---GUaGGGCCGCUGGCA----GCC- -5'
25676 3' -57.3 NC_005337.1 + 133054 0.66 0.879888
Target:  5'- uUCGUaGCUUCGUCcgcguacgcggcgCCGGUGGCCGcCuGGa -3'
miRNA:   3'- -AGCA-UGGAGUAG-------------GGCCGCUGGCaG-CC- -5'
25676 3' -57.3 NC_005337.1 + 2520 0.66 0.873575
Target:  5'- cCGcACCUCGgaggCCCGGaCGuCCGggcccCGGg -3'
miRNA:   3'- aGCaUGGAGUa---GGGCC-GCuGGCa----GCC- -5'
25676 3' -57.3 NC_005337.1 + 84518 0.66 0.873575
Target:  5'- cUCGUgGCCUCcgagGUCCCcgaggacgcGGCGGCUGU-GGa -3'
miRNA:   3'- -AGCA-UGGAG----UAGGG---------CCGCUGGCAgCC- -5'
25676 3' -57.3 NC_005337.1 + 36430 0.66 0.873575
Target:  5'- gCGcGCCUCA-CCCGGCugcaGCUGcgCGGg -3'
miRNA:   3'- aGCaUGGAGUaGGGCCGc---UGGCa-GCC- -5'
25676 3' -57.3 NC_005337.1 + 35503 0.66 0.866364
Target:  5'- gUUGUACCg-GUCCaCGGCG-CUGcCGGu -3'
miRNA:   3'- -AGCAUGGagUAGG-GCCGCuGGCaGCC- -5'
25676 3' -57.3 NC_005337.1 + 54232 0.66 0.858951
Target:  5'- gCGUAgaucuCCUCGUCCgGcGCGuCCGggcCGGg -3'
miRNA:   3'- aGCAU-----GGAGUAGGgC-CGCuGGCa--GCC- -5'
25676 3' -57.3 NC_005337.1 + 88257 0.66 0.858951
Target:  5'- gCGUGCCggcgCgCCGGCGggcGCCG-CGGa -3'
miRNA:   3'- aGCAUGGaguaG-GGCCGC---UGGCaGCC- -5'
25676 3' -57.3 NC_005337.1 + 22714 0.67 0.851343
Target:  5'- gUCGcACCUCGUCUaCGGC-ACCGcCGa -3'
miRNA:   3'- -AGCaUGGAGUAGG-GCCGcUGGCaGCc -5'
25676 3' -57.3 NC_005337.1 + 98758 0.67 0.851343
Target:  5'- cUGcACCUCGUCaCCGGCagcGCCGU-GGa -3'
miRNA:   3'- aGCaUGGAGUAG-GGCCGc--UGGCAgCC- -5'
25676 3' -57.3 NC_005337.1 + 104668 0.67 0.851343
Target:  5'- gCGUGCCcaaggUCGUCauGGCGuCCGcgUCGGa -3'
miRNA:   3'- aGCAUGG-----AGUAGggCCGCuGGC--AGCC- -5'
25676 3' -57.3 NC_005337.1 + 10022 0.67 0.843546
Target:  5'- gUCGUGCUcgAUCCCGGaaucggaggaCGACuCGUCGu -3'
miRNA:   3'- -AGCAUGGagUAGGGCC----------GCUG-GCAGCc -5'
25676 3' -57.3 NC_005337.1 + 36532 0.67 0.843546
Target:  5'- ---cGCCgcgggCGUcCCCGGCGGCUGggCGGc -3'
miRNA:   3'- agcaUGGa----GUA-GGGCCGCUGGCa-GCC- -5'
25676 3' -57.3 NC_005337.1 + 3511 0.67 0.827407
Target:  5'- gUUGUGgCgggCGUCCaCGGUGcACaCGUCGGa -3'
miRNA:   3'- -AGCAUgGa--GUAGG-GCCGC-UG-GCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 130277 0.67 0.827407
Target:  5'- aCGU-CCUCGUCagcGCGACCGUCc- -3'
miRNA:   3'- aGCAuGGAGUAGggcCGCUGGCAGcc -5'
25676 3' -57.3 NC_005337.1 + 103985 0.67 0.827407
Target:  5'- -gGUGCCggcCGUCCUGGCGcucaccugcgcGCCGU-GGa -3'
miRNA:   3'- agCAUGGa--GUAGGGCCGC-----------UGGCAgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.