miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 3' -57.3 NC_005337.1 + 49884 0.68 0.801946
Target:  5'- cUCGUccuCCUCGUccggaaCCCGGCGACCa---- -3'
miRNA:   3'- -AGCAu--GGAGUA------GGGCCGCUGGcagcc -5'
25676 3' -57.3 NC_005337.1 + 49735 0.68 0.792269
Target:  5'- uUCGUuuccacaGCCgccgCGUCCuCGGgGACC-UCGGa -3'
miRNA:   3'- -AGCA-------UGGa---GUAGG-GCCgCUGGcAGCC- -5'
25676 3' -57.3 NC_005337.1 + 52088 0.68 0.756688
Target:  5'- cCGUGCg-CG-CCCGGCGGCCG-CGu -3'
miRNA:   3'- aGCAUGgaGUaGGGCCGCUGGCaGCc -5'
25676 3' -57.3 NC_005337.1 + 93286 0.68 0.756688
Target:  5'- -gGUGCgUCGgcgCCUGGUGGCgGUCGa -3'
miRNA:   3'- agCAUGgAGUa--GGGCCGCUGgCAGCc -5'
25676 3' -57.3 NC_005337.1 + 59167 0.68 0.775166
Target:  5'- aCGUuCCUCc-CCCaGGcCGugCGUCGGg -3'
miRNA:   3'- aGCAuGGAGuaGGG-CC-GCugGCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 125410 0.68 0.801946
Target:  5'- gCGUGCCgUCAUgCaCGGCGG-CGUCaGGg -3'
miRNA:   3'- aGCAUGG-AGUAgG-GCCGCUgGCAG-CC- -5'
25676 3' -57.3 NC_005337.1 + 87586 0.68 0.801946
Target:  5'- gUCGccgACC---UCCCGGCG-CCGcUCGGg -3'
miRNA:   3'- -AGCa--UGGaguAGGGCCGCuGGC-AGCC- -5'
25676 3' -57.3 NC_005337.1 + 118793 0.68 0.765984
Target:  5'- gCGgcGCCgUCGUgCCGcGCGcGCCGUCGGu -3'
miRNA:   3'- aGCa-UGG-AGUAgGGC-CGC-UGGCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 96275 0.67 0.81908
Target:  5'- --aUGCCggCGuUCCCGGCGG-CGUUGGg -3'
miRNA:   3'- agcAUGGa-GU-AGGGCCGCUgGCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 128194 0.67 0.81908
Target:  5'- cUCGUGCaaggaCUCgAUCCUGGCGccgcucgugGCCG-CGGg -3'
miRNA:   3'- -AGCAUG-----GAG-UAGGGCCGC---------UGGCaGCC- -5'
25676 3' -57.3 NC_005337.1 + 98758 0.67 0.851343
Target:  5'- cUGcACCUCGUCaCCGGCagcGCCGU-GGa -3'
miRNA:   3'- aGCaUGGAGUAG-GGCCGc--UGGCAgCC- -5'
25676 3' -57.3 NC_005337.1 + 3511 0.67 0.827407
Target:  5'- gUUGUGgCgggCGUCCaCGGUGcACaCGUCGGa -3'
miRNA:   3'- -AGCAUgGa--GUAGG-GCCGC-UG-GCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 130277 0.67 0.827407
Target:  5'- aCGU-CCUCGUCagcGCGACCGUCc- -3'
miRNA:   3'- aGCAuGGAGUAGggcCGCUGGCAGcc -5'
25676 3' -57.3 NC_005337.1 + 36532 0.67 0.843546
Target:  5'- ---cGCCgcgggCGUcCCCGGCGGCUGggCGGc -3'
miRNA:   3'- agcaUGGa----GUA-GGGCCGCUGGCa-GCC- -5'
25676 3' -57.3 NC_005337.1 + 22714 0.67 0.851343
Target:  5'- gUCGcACCUCGUCUaCGGC-ACCGcCGa -3'
miRNA:   3'- -AGCaUGGAGUAGG-GCCGcUGGCaGCc -5'
25676 3' -57.3 NC_005337.1 + 10022 0.67 0.843546
Target:  5'- gUCGUGCUcgAUCCCGGaaucggaggaCGACuCGUCGu -3'
miRNA:   3'- -AGCAUGGagUAGGGCC----------GCUG-GCAGCc -5'
25676 3' -57.3 NC_005337.1 + 103985 0.67 0.827407
Target:  5'- -gGUGCCggcCGUCCUGGCGcucaccugcgcGCCGU-GGa -3'
miRNA:   3'- agCAUGGa--GUAGGGCCGC-----------UGGCAgCC- -5'
25676 3' -57.3 NC_005337.1 + 29409 0.67 0.81908
Target:  5'- gUGUGCCguUUAUCCgGGCGGCgaUGUCGc -3'
miRNA:   3'- aGCAUGG--AGUAGGgCCGCUG--GCAGCc -5'
25676 3' -57.3 NC_005337.1 + 111389 0.67 0.81908
Target:  5'- -gGUGCCg---CUCGcGCGGCaCGUCGGa -3'
miRNA:   3'- agCAUGGaguaGGGC-CGCUG-GCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 69104 0.67 0.810591
Target:  5'- cUCGUggugcACCUCGUCUgcgGGCGAgCCG-CGGu -3'
miRNA:   3'- -AGCA-----UGGAGUAGGg--CCGCU-GGCaGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.