miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 3' -57.3 NC_005337.1 + 42369 1.11 0.001807
Target:  5'- cUCGUACCUCAUCCCGGCGACCGUCGGg -3'
miRNA:   3'- -AGCAUGGAGUAGGGCCGCUGGCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 37629 0.78 0.284348
Target:  5'- aCGUugCUCAUCCaGGCGccGCgGUCGGg -3'
miRNA:   3'- aGCAugGAGUAGGgCCGC--UGgCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 51614 0.71 0.619387
Target:  5'- aCGUACCUCuUCuUCGGCGACgagcugcgGUCGGc -3'
miRNA:   3'- aGCAUGGAGuAG-GGCCGCUGg-------CAGCC- -5'
25676 3' -57.3 NC_005337.1 + 68389 0.71 0.619387
Target:  5'- cCGU-CCUCggUCaCGGCGACCG-CGGc -3'
miRNA:   3'- aGCAuGGAGuaGG-GCCGCUGGCaGCC- -5'
25676 3' -57.3 NC_005337.1 + 35719 0.71 0.619387
Target:  5'- gCGUGaCgaaGUCCCGGCuggcaagcacgcGGCCGUCGGg -3'
miRNA:   3'- aGCAUgGag-UAGGGCCG------------CUGGCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 115094 0.71 0.619387
Target:  5'- aUCGUGgaguCCggaCA-CCCGGUGGCCGUCGc -3'
miRNA:   3'- -AGCAU----GGa--GUaGGGCCGCUGGCAGCc -5'
25676 3' -57.3 NC_005337.1 + 75408 0.71 0.639388
Target:  5'- aCGUACCgCcgCUCGGCGGgCGUCa- -3'
miRNA:   3'- aGCAUGGaGuaGGGCCGCUgGCAGcc -5'
25676 3' -57.3 NC_005337.1 + 90927 0.71 0.639388
Target:  5'- gCG-GCgUCuUCCCGGCGGCCagcgcGUCGGc -3'
miRNA:   3'- aGCaUGgAGuAGGGCCGCUGG-----CAGCC- -5'
25676 3' -57.3 NC_005337.1 + 109828 0.7 0.659366
Target:  5'- aCGUACUg---CCCGGCGGCgGUCu- -3'
miRNA:   3'- aGCAUGGaguaGGGCCGCUGgCAGcc -5'
25676 3' -57.3 NC_005337.1 + 37953 0.69 0.699008
Target:  5'- cCGUGCCUCGUCgUGGgGuACUGcgCGGc -3'
miRNA:   3'- aGCAUGGAGUAGgGCCgC-UGGCa-GCC- -5'
25676 3' -57.3 NC_005337.1 + 39539 0.69 0.699008
Target:  5'- gUCGUggcuGCCggCGcCCCGGCGGgCGcUCGGg -3'
miRNA:   3'- -AGCA----UGGa-GUaGGGCCGCUgGC-AGCC- -5'
25676 3' -57.3 NC_005337.1 + 91181 0.69 0.699008
Target:  5'- aCGaACUUCAUCCCgGGCG-CCGcgaugCGGa -3'
miRNA:   3'- aGCaUGGAGUAGGG-CCGCuGGCa----GCC- -5'
25676 3' -57.3 NC_005337.1 + 32538 0.69 0.708805
Target:  5'- cUCGUGgCUCAgcUCCCGGCa--CGUCaGGg -3'
miRNA:   3'- -AGCAUgGAGU--AGGGCCGcugGCAG-CC- -5'
25676 3' -57.3 NC_005337.1 + 29363 0.69 0.71854
Target:  5'- -gGUGcCCUCGa--CGGCGGCCGUCGcGg -3'
miRNA:   3'- agCAU-GGAGUaggGCCGCUGGCAGC-C- -5'
25676 3' -57.3 NC_005337.1 + 115327 0.69 0.71854
Target:  5'- cCGUGCUcgCGacgCCCGGCGGCgGgCGGa -3'
miRNA:   3'- aGCAUGGa-GUa--GGGCCGCUGgCaGCC- -5'
25676 3' -57.3 NC_005337.1 + 89897 0.69 0.728205
Target:  5'- ---gGCCcCAUCCCGGUGGgCGgCGGg -3'
miRNA:   3'- agcaUGGaGUAGGGCCGCUgGCaGCC- -5'
25676 3' -57.3 NC_005337.1 + 123182 0.69 0.734923
Target:  5'- -gGUACCUC-UCCagcugcggucgcggCGGCGACCGaucugCGGc -3'
miRNA:   3'- agCAUGGAGuAGG--------------GCCGCUGGCa----GCC- -5'
25676 3' -57.3 NC_005337.1 + 93286 0.68 0.756688
Target:  5'- -gGUGCgUCGgcgCCUGGUGGCgGUCGa -3'
miRNA:   3'- agCAUGgAGUa--GGGCCGCUGgCAGCc -5'
25676 3' -57.3 NC_005337.1 + 52088 0.68 0.756688
Target:  5'- cCGUGCg-CG-CCCGGCGGCCG-CGu -3'
miRNA:   3'- aGCAUGgaGUaGGGCCGCUGGCaGCc -5'
25676 3' -57.3 NC_005337.1 + 118793 0.68 0.765984
Target:  5'- gCGgcGCCgUCGUgCCGcGCGcGCCGUCGGu -3'
miRNA:   3'- aGCa-UGG-AGUAgGGC-CGC-UGGCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.