miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 3' -57.3 NC_005337.1 + 2520 0.66 0.873575
Target:  5'- cCGcACCUCGgaggCCCGGaCGuCCGggcccCGGg -3'
miRNA:   3'- aGCaUGGAGUa---GGGCC-GCuGGCa----GCC- -5'
25676 3' -57.3 NC_005337.1 + 3511 0.67 0.827407
Target:  5'- gUUGUGgCgggCGUCCaCGGUGcACaCGUCGGa -3'
miRNA:   3'- -AGCAUgGa--GUAGG-GCCGC-UG-GCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 9642 0.66 0.880579
Target:  5'- gCGUACCUCGUCuCCGGaGGCgCG-Ca- -3'
miRNA:   3'- aGCAUGGAGUAG-GGCCgCUG-GCaGcc -5'
25676 3' -57.3 NC_005337.1 + 10022 0.67 0.843546
Target:  5'- gUCGUGCUcgAUCCCGGaaucggaggaCGACuCGUCGu -3'
miRNA:   3'- -AGCAUGGagUAGGGCC----------GCUG-GCAGCc -5'
25676 3' -57.3 NC_005337.1 + 22714 0.67 0.851343
Target:  5'- gUCGcACCUCGUCUaCGGC-ACCGcCGa -3'
miRNA:   3'- -AGCaUGGAGUAGG-GCCGcUGGCaGCc -5'
25676 3' -57.3 NC_005337.1 + 29363 0.69 0.71854
Target:  5'- -gGUGcCCUCGa--CGGCGGCCGUCGcGg -3'
miRNA:   3'- agCAU-GGAGUaggGCCGCUGGCAGC-C- -5'
25676 3' -57.3 NC_005337.1 + 29409 0.67 0.81908
Target:  5'- gUGUGCCguUUAUCCgGGCGGCgaUGUCGc -3'
miRNA:   3'- aGCAUGG--AGUAGGgCCGCUG--GCAGCc -5'
25676 3' -57.3 NC_005337.1 + 32538 0.69 0.708805
Target:  5'- cUCGUGgCUCAgcUCCCGGCa--CGUCaGGg -3'
miRNA:   3'- -AGCAUgGAGU--AGGGCCGcugGCAG-CC- -5'
25676 3' -57.3 NC_005337.1 + 35503 0.66 0.866364
Target:  5'- gUUGUACCg-GUCCaCGGCG-CUGcCGGu -3'
miRNA:   3'- -AGCAUGGagUAGG-GCCGCuGGCaGCC- -5'
25676 3' -57.3 NC_005337.1 + 35719 0.71 0.619387
Target:  5'- gCGUGaCgaaGUCCCGGCuggcaagcacgcGGCCGUCGGg -3'
miRNA:   3'- aGCAUgGag-UAGGGCCG------------CUGGCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 36430 0.66 0.873575
Target:  5'- gCGcGCCUCA-CCCGGCugcaGCUGcgCGGg -3'
miRNA:   3'- aGCaUGGAGUaGGGCCGc---UGGCa-GCC- -5'
25676 3' -57.3 NC_005337.1 + 36532 0.67 0.843546
Target:  5'- ---cGCCgcgggCGUcCCCGGCGGCUGggCGGc -3'
miRNA:   3'- agcaUGGa----GUA-GGGCCGCUGGCa-GCC- -5'
25676 3' -57.3 NC_005337.1 + 37629 0.78 0.284348
Target:  5'- aCGUugCUCAUCCaGGCGccGCgGUCGGg -3'
miRNA:   3'- aGCAugGAGUAGGgCCGC--UGgCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 37953 0.69 0.699008
Target:  5'- cCGUGCCUCGUCgUGGgGuACUGcgCGGc -3'
miRNA:   3'- aGCAUGGAGUAGgGCCgC-UGGCa-GCC- -5'
25676 3' -57.3 NC_005337.1 + 39539 0.69 0.699008
Target:  5'- gUCGUggcuGCCggCGcCCCGGCGGgCGcUCGGg -3'
miRNA:   3'- -AGCA----UGGa-GUaGGGCCGCUgGC-AGCC- -5'
25676 3' -57.3 NC_005337.1 + 41924 0.66 0.887372
Target:  5'- aUCGU-CCUCGUCCU--CG-UCGUCGGa -3'
miRNA:   3'- -AGCAuGGAGUAGGGccGCuGGCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 42369 1.11 0.001807
Target:  5'- cUCGUACCUCAUCCCGGCGACCGUCGGg -3'
miRNA:   3'- -AGCAUGGAGUAGGGCCGCUGGCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 49735 0.68 0.792269
Target:  5'- uUCGUuuccacaGCCgccgCGUCCuCGGgGACC-UCGGa -3'
miRNA:   3'- -AGCA-------UGGa---GUAGG-GCCgCUGGcAGCC- -5'
25676 3' -57.3 NC_005337.1 + 49884 0.68 0.801946
Target:  5'- cUCGUccuCCUCGUccggaaCCCGGCGACCa---- -3'
miRNA:   3'- -AGCAu--GGAGUA------GGGCCGCUGGcagcc -5'
25676 3' -57.3 NC_005337.1 + 51614 0.71 0.619387
Target:  5'- aCGUACCUCuUCuUCGGCGACgagcugcgGUCGGc -3'
miRNA:   3'- aGCAUGGAGuAG-GGCCGCUGg-------CAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.