miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 3' -57.3 NC_005337.1 + 52088 0.68 0.756688
Target:  5'- cCGUGCg-CG-CCCGGCGGCCG-CGu -3'
miRNA:   3'- aGCAUGgaGUaGGGCCGCUGGCaGCc -5'
25676 3' -57.3 NC_005337.1 + 54232 0.66 0.858951
Target:  5'- gCGUAgaucuCCUCGUCCgGcGCGuCCGggcCGGg -3'
miRNA:   3'- aGCAU-----GGAGUAGGgC-CGCuGGCa--GCC- -5'
25676 3' -57.3 NC_005337.1 + 59167 0.68 0.775166
Target:  5'- aCGUuCCUCc-CCCaGGcCGugCGUCGGg -3'
miRNA:   3'- aGCAuGGAGuaGGG-CC-GCugGCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 59376 0.66 0.880579
Target:  5'- cCGcGCCaUCAcgccCCCGGCGuCCucgGUCGGg -3'
miRNA:   3'- aGCaUGG-AGUa---GGGCCGCuGG---CAGCC- -5'
25676 3' -57.3 NC_005337.1 + 65243 0.68 0.784226
Target:  5'- gCGUACCccugcacgccagUCAUCCgggacacggcggCGGCGAUCGcgCGGa -3'
miRNA:   3'- aGCAUGG------------AGUAGG------------GCCGCUGGCa-GCC- -5'
25676 3' -57.3 NC_005337.1 + 68389 0.71 0.619387
Target:  5'- cCGU-CCUCggUCaCGGCGACCG-CGGc -3'
miRNA:   3'- aGCAuGGAGuaGG-GCCGCUGGCaGCC- -5'
25676 3' -57.3 NC_005337.1 + 69104 0.67 0.810591
Target:  5'- cUCGUggugcACCUCGUCUgcgGGCGAgCCG-CGGu -3'
miRNA:   3'- -AGCA-----UGGAGUAGGg--CCGCU-GGCaGCC- -5'
25676 3' -57.3 NC_005337.1 + 70699 0.66 0.887372
Target:  5'- -aGUuCCUCA--CCGGCGACCG-CGc -3'
miRNA:   3'- agCAuGGAGUagGGCCGCUGGCaGCc -5'
25676 3' -57.3 NC_005337.1 + 75408 0.71 0.639388
Target:  5'- aCGUACCgCcgCUCGGCGGgCGUCa- -3'
miRNA:   3'- aGCAUGGaGuaGGGCCGCUgGCAGcc -5'
25676 3' -57.3 NC_005337.1 + 78026 0.68 0.775166
Target:  5'- gCGUcgGCCUCGUCggCCGGCGACa--UGGg -3'
miRNA:   3'- aGCA--UGGAGUAG--GGCCGCUGgcaGCC- -5'
25676 3' -57.3 NC_005337.1 + 84518 0.66 0.873575
Target:  5'- cUCGUgGCCUCcgagGUCCCcgaggacgcGGCGGCUGU-GGa -3'
miRNA:   3'- -AGCA-UGGAG----UAGGG---------CCGCUGGCAgCC- -5'
25676 3' -57.3 NC_005337.1 + 87586 0.68 0.801946
Target:  5'- gUCGccgACC---UCCCGGCG-CCGcUCGGg -3'
miRNA:   3'- -AGCa--UGGaguAGGGCCGCuGGC-AGCC- -5'
25676 3' -57.3 NC_005337.1 + 88257 0.66 0.858951
Target:  5'- gCGUGCCggcgCgCCGGCGggcGCCG-CGGa -3'
miRNA:   3'- aGCAUGGaguaG-GGCCGC---UGGCaGCC- -5'
25676 3' -57.3 NC_005337.1 + 89897 0.69 0.728205
Target:  5'- ---gGCCcCAUCCCGGUGGgCGgCGGg -3'
miRNA:   3'- agcaUGGaGUAGGGCCGCUgGCaGCC- -5'
25676 3' -57.3 NC_005337.1 + 90927 0.71 0.639388
Target:  5'- gCG-GCgUCuUCCCGGCGGCCagcgcGUCGGc -3'
miRNA:   3'- aGCaUGgAGuAGGGCCGCUGG-----CAGCC- -5'
25676 3' -57.3 NC_005337.1 + 91181 0.69 0.699008
Target:  5'- aCGaACUUCAUCCCgGGCG-CCGcgaugCGGa -3'
miRNA:   3'- aGCaUGGAGUAGGG-CCGCuGGCa----GCC- -5'
25676 3' -57.3 NC_005337.1 + 93286 0.68 0.756688
Target:  5'- -gGUGCgUCGgcgCCUGGUGGCgGUCGa -3'
miRNA:   3'- agCAUGgAGUa--GGGCCGCUGgCAGCc -5'
25676 3' -57.3 NC_005337.1 + 96275 0.67 0.81908
Target:  5'- --aUGCCggCGuUCCCGGCGG-CGUUGGg -3'
miRNA:   3'- agcAUGGa-GU-AGGGCCGCUgGCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 98758 0.67 0.851343
Target:  5'- cUGcACCUCGUCaCCGGCagcGCCGU-GGa -3'
miRNA:   3'- aGCaUGGAGUAG-GGCCGc--UGGCAgCC- -5'
25676 3' -57.3 NC_005337.1 + 103985 0.67 0.827407
Target:  5'- -gGUGCCggcCGUCCUGGCGcucaccugcgcGCCGU-GGa -3'
miRNA:   3'- agCAUGGa--GUAGGGCCGC-----------UGGCAgCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.