Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25676 | 3' | -57.3 | NC_005337.1 | + | 104668 | 0.67 | 0.851343 |
Target: 5'- gCGUGCCcaaggUCGUCauGGCGuCCGcgUCGGa -3' miRNA: 3'- aGCAUGG-----AGUAGggCCGCuGGC--AGCC- -5' |
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25676 | 3' | -57.3 | NC_005337.1 | + | 109828 | 0.7 | 0.659366 |
Target: 5'- aCGUACUg---CCCGGCGGCgGUCu- -3' miRNA: 3'- aGCAUGGaguaGGGCCGCUGgCAGcc -5' |
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25676 | 3' | -57.3 | NC_005337.1 | + | 111389 | 0.67 | 0.81908 |
Target: 5'- -gGUGCCg---CUCGcGCGGCaCGUCGGa -3' miRNA: 3'- agCAUGGaguaGGGC-CGCUG-GCAGCC- -5' |
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25676 | 3' | -57.3 | NC_005337.1 | + | 115094 | 0.71 | 0.619387 |
Target: 5'- aUCGUGgaguCCggaCA-CCCGGUGGCCGUCGc -3' miRNA: 3'- -AGCAU----GGa--GUaGGGCCGCUGGCAGCc -5' |
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25676 | 3' | -57.3 | NC_005337.1 | + | 115327 | 0.69 | 0.71854 |
Target: 5'- cCGUGCUcgCGacgCCCGGCGGCgGgCGGa -3' miRNA: 3'- aGCAUGGa-GUa--GGGCCGCUGgCaGCC- -5' |
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25676 | 3' | -57.3 | NC_005337.1 | + | 118793 | 0.68 | 0.765984 |
Target: 5'- gCGgcGCCgUCGUgCCGcGCGcGCCGUCGGu -3' miRNA: 3'- aGCa-UGG-AGUAgGGC-CGC-UGGCAGCC- -5' |
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25676 | 3' | -57.3 | NC_005337.1 | + | 120116 | 0.68 | 0.784226 |
Target: 5'- gUCGUACaUCG-CCCGGCuGCCGaaGGa -3' miRNA: 3'- -AGCAUGgAGUaGGGCCGcUGGCagCC- -5' |
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25676 | 3' | -57.3 | NC_005337.1 | + | 123182 | 0.69 | 0.734923 |
Target: 5'- -gGUACCUC-UCCagcugcggucgcggCGGCGACCGaucugCGGc -3' miRNA: 3'- agCAUGGAGuAGG--------------GCCGCUGGCa----GCC- -5' |
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25676 | 3' | -57.3 | NC_005337.1 | + | 125410 | 0.68 | 0.801946 |
Target: 5'- gCGUGCCgUCAUgCaCGGCGG-CGUCaGGg -3' miRNA: 3'- aGCAUGG-AGUAgG-GCCGCUgGCAG-CC- -5' |
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25676 | 3' | -57.3 | NC_005337.1 | + | 127414 | 0.66 | 0.880579 |
Target: 5'- aCGcUGCUgcacCA-CCUGGCGACCGUgccgCGGg -3' miRNA: 3'- aGC-AUGGa---GUaGGGCCGCUGGCA----GCC- -5' |
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25676 | 3' | -57.3 | NC_005337.1 | + | 128194 | 0.67 | 0.81908 |
Target: 5'- cUCGUGCaaggaCUCgAUCCUGGCGccgcucgugGCCG-CGGg -3' miRNA: 3'- -AGCAUG-----GAG-UAGGGCCGC---------UGGCaGCC- -5' |
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25676 | 3' | -57.3 | NC_005337.1 | + | 130277 | 0.67 | 0.827407 |
Target: 5'- aCGU-CCUCGUCagcGCGACCGUCc- -3' miRNA: 3'- aGCAuGGAGUAGggcCGCUGGCAGcc -5' |
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25676 | 3' | -57.3 | NC_005337.1 | + | 133054 | 0.66 | 0.879888 |
Target: 5'- uUCGUaGCUUCGUCcgcguacgcggcgCCGGUGGCCGcCuGGa -3' miRNA: 3'- -AGCA-UGGAGUAG-------------GGCCGCUGGCaG-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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