miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 3' -57.3 NC_005337.1 + 98758 0.67 0.851343
Target:  5'- cUGcACCUCGUCaCCGGCagcGCCGU-GGa -3'
miRNA:   3'- aGCaUGGAGUAG-GGCCGc--UGGCAgCC- -5'
25676 3' -57.3 NC_005337.1 + 59167 0.68 0.775166
Target:  5'- aCGUuCCUCc-CCCaGGcCGugCGUCGGg -3'
miRNA:   3'- aGCAuGGAGuaGGG-CC-GCugGCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 125410 0.68 0.801946
Target:  5'- gCGUGCCgUCAUgCaCGGCGG-CGUCaGGg -3'
miRNA:   3'- aGCAUGG-AGUAgG-GCCGCUgGCAG-CC- -5'
25676 3' -57.3 NC_005337.1 + 87586 0.68 0.801946
Target:  5'- gUCGccgACC---UCCCGGCG-CCGcUCGGg -3'
miRNA:   3'- -AGCa--UGGaguAGGGCCGCuGGC-AGCC- -5'
25676 3' -57.3 NC_005337.1 + 128194 0.67 0.81908
Target:  5'- cUCGUGCaaggaCUCgAUCCUGGCGccgcucgugGCCG-CGGg -3'
miRNA:   3'- -AGCAUG-----GAG-UAGGGCCGC---------UGGCaGCC- -5'
25676 3' -57.3 NC_005337.1 + 96275 0.67 0.81908
Target:  5'- --aUGCCggCGuUCCCGGCGG-CGUUGGg -3'
miRNA:   3'- agcAUGGa-GU-AGGGCCGCUgGCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 3511 0.67 0.827407
Target:  5'- gUUGUGgCgggCGUCCaCGGUGcACaCGUCGGa -3'
miRNA:   3'- -AGCAUgGa--GUAGG-GCCGC-UG-GCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 130277 0.67 0.827407
Target:  5'- aCGU-CCUCGUCagcGCGACCGUCc- -3'
miRNA:   3'- aGCAuGGAGUAGggcCGCUGGCAGcc -5'
25676 3' -57.3 NC_005337.1 + 36532 0.67 0.843546
Target:  5'- ---cGCCgcgggCGUcCCCGGCGGCUGggCGGc -3'
miRNA:   3'- agcaUGGa----GUA-GGGCCGCUGGCa-GCC- -5'
25676 3' -57.3 NC_005337.1 + 93286 0.68 0.756688
Target:  5'- -gGUGCgUCGgcgCCUGGUGGCgGUCGa -3'
miRNA:   3'- agCAUGgAGUa--GGGCCGCUGgCAGCc -5'
25676 3' -57.3 NC_005337.1 + 52088 0.68 0.756688
Target:  5'- cCGUGCg-CG-CCCGGCGGCCG-CGu -3'
miRNA:   3'- aGCAUGgaGUaGGGCCGCUGGCaGCc -5'
25676 3' -57.3 NC_005337.1 + 29363 0.69 0.71854
Target:  5'- -gGUGcCCUCGa--CGGCGGCCGUCGcGg -3'
miRNA:   3'- agCAU-GGAGUaggGCCGCUGGCAGC-C- -5'
25676 3' -57.3 NC_005337.1 + 35719 0.71 0.619387
Target:  5'- gCGUGaCgaaGUCCCGGCuggcaagcacgcGGCCGUCGGg -3'
miRNA:   3'- aGCAUgGag-UAGGGCCG------------CUGGCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 51614 0.71 0.619387
Target:  5'- aCGUACCUCuUCuUCGGCGACgagcugcgGUCGGc -3'
miRNA:   3'- aGCAUGGAGuAG-GGCCGCUGg-------CAGCC- -5'
25676 3' -57.3 NC_005337.1 + 75408 0.71 0.639388
Target:  5'- aCGUACCgCcgCUCGGCGGgCGUCa- -3'
miRNA:   3'- aGCAUGGaGuaGGGCCGCUgGCAGcc -5'
25676 3' -57.3 NC_005337.1 + 90927 0.71 0.639388
Target:  5'- gCG-GCgUCuUCCCGGCGGCCagcgcGUCGGc -3'
miRNA:   3'- aGCaUGgAGuAGGGCCGCUGG-----CAGCC- -5'
25676 3' -57.3 NC_005337.1 + 109828 0.7 0.659366
Target:  5'- aCGUACUg---CCCGGCGGCgGUCu- -3'
miRNA:   3'- aGCAUGGaguaGGGCCGCUGgCAGcc -5'
25676 3' -57.3 NC_005337.1 + 91181 0.69 0.699008
Target:  5'- aCGaACUUCAUCCCgGGCG-CCGcgaugCGGa -3'
miRNA:   3'- aGCaUGGAGUAGGG-CCGCuGGCa----GCC- -5'
25676 3' -57.3 NC_005337.1 + 32538 0.69 0.708805
Target:  5'- cUCGUGgCUCAgcUCCCGGCa--CGUCaGGg -3'
miRNA:   3'- -AGCAUgGAGU--AGGGCCGcugGCAG-CC- -5'
25676 3' -57.3 NC_005337.1 + 115327 0.69 0.71854
Target:  5'- cCGUGCUcgCGacgCCCGGCGGCgGgCGGa -3'
miRNA:   3'- aGCAUGGa-GUa--GGGCCGCUGgCaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.