miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 3' -57.3 NC_005337.1 + 42369 1.11 0.001807
Target:  5'- cUCGUACCUCAUCCCGGCGACCGUCGGg -3'
miRNA:   3'- -AGCAUGGAGUAGGGCCGCUGGCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 10022 0.67 0.843546
Target:  5'- gUCGUGCUcgAUCCCGGaaucggaggaCGACuCGUCGu -3'
miRNA:   3'- -AGCAUGGagUAGGGCC----------GCUG-GCAGCc -5'
25676 3' -57.3 NC_005337.1 + 88257 0.66 0.858951
Target:  5'- gCGUGCCggcgCgCCGGCGggcGCCG-CGGa -3'
miRNA:   3'- aGCAUGGaguaG-GGCCGC---UGGCaGCC- -5'
25676 3' -57.3 NC_005337.1 + 41924 0.66 0.887372
Target:  5'- aUCGU-CCUCGUCCU--CG-UCGUCGGa -3'
miRNA:   3'- -AGCAuGGAGUAGGGccGCuGGCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 37953 0.69 0.699008
Target:  5'- cCGUGCCUCGUCgUGGgGuACUGcgCGGc -3'
miRNA:   3'- aGCAUGGAGUAGgGCCgC-UGGCa-GCC- -5'
25676 3' -57.3 NC_005337.1 + 89897 0.69 0.728205
Target:  5'- ---gGCCcCAUCCCGGUGGgCGgCGGg -3'
miRNA:   3'- agcaUGGaGUAGGGCCGCUgGCaGCC- -5'
25676 3' -57.3 NC_005337.1 + 118793 0.68 0.765984
Target:  5'- gCGgcGCCgUCGUgCCGcGCGcGCCGUCGGu -3'
miRNA:   3'- aGCa-UGG-AGUAgGGC-CGC-UGGCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 78026 0.68 0.775166
Target:  5'- gCGUcgGCCUCGUCggCCGGCGACa--UGGg -3'
miRNA:   3'- aGCA--UGGAGUAG--GGCCGCUGgcaGCC- -5'
25676 3' -57.3 NC_005337.1 + 49735 0.68 0.792269
Target:  5'- uUCGUuuccacaGCCgccgCGUCCuCGGgGACC-UCGGa -3'
miRNA:   3'- -AGCA-------UGGa---GUAGG-GCCgCUGGcAGCC- -5'
25676 3' -57.3 NC_005337.1 + 103985 0.67 0.827407
Target:  5'- -gGUGCCggcCGUCCUGGCGcucaccugcgcGCCGU-GGa -3'
miRNA:   3'- agCAUGGa--GUAGGGCCGC-----------UGGCAgCC- -5'
25676 3' -57.3 NC_005337.1 + 69104 0.67 0.810591
Target:  5'- cUCGUggugcACCUCGUCUgcgGGCGAgCCG-CGGu -3'
miRNA:   3'- -AGCA-----UGGAGUAGGg--CCGCU-GGCaGCC- -5'
25676 3' -57.3 NC_005337.1 + 120116 0.68 0.784226
Target:  5'- gUCGUACaUCG-CCCGGCuGCCGaaGGa -3'
miRNA:   3'- -AGCAUGgAGUaGGGCCGcUGGCagCC- -5'
25676 3' -57.3 NC_005337.1 + 68389 0.71 0.619387
Target:  5'- cCGU-CCUCggUCaCGGCGACCG-CGGc -3'
miRNA:   3'- aGCAuGGAGuaGG-GCCGCUGGCaGCC- -5'
25676 3' -57.3 NC_005337.1 + 111389 0.67 0.81908
Target:  5'- -gGUGCCg---CUCGcGCGGCaCGUCGGa -3'
miRNA:   3'- agCAUGGaguaGGGC-CGCUG-GCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 115094 0.71 0.619387
Target:  5'- aUCGUGgaguCCggaCA-CCCGGUGGCCGUCGc -3'
miRNA:   3'- -AGCAU----GGa--GUaGGGCCGCUGGCAGCc -5'
25676 3' -57.3 NC_005337.1 + 65243 0.68 0.784226
Target:  5'- gCGUACCccugcacgccagUCAUCCgggacacggcggCGGCGAUCGcgCGGa -3'
miRNA:   3'- aGCAUGG------------AGUAGG------------GCCGCUGGCa-GCC- -5'
25676 3' -57.3 NC_005337.1 + 29409 0.67 0.81908
Target:  5'- gUGUGCCguUUAUCCgGGCGGCgaUGUCGc -3'
miRNA:   3'- aGCAUGG--AGUAGGgCCGCUG--GCAGCc -5'
25676 3' -57.3 NC_005337.1 + 104668 0.67 0.851343
Target:  5'- gCGUGCCcaaggUCGUCauGGCGuCCGcgUCGGa -3'
miRNA:   3'- aGCAUGG-----AGUAGggCCGCuGGC--AGCC- -5'
25676 3' -57.3 NC_005337.1 + 39539 0.69 0.699008
Target:  5'- gUCGUggcuGCCggCGcCCCGGCGGgCGcUCGGg -3'
miRNA:   3'- -AGCA----UGGa-GUaGGGCCGCUgGC-AGCC- -5'
25676 3' -57.3 NC_005337.1 + 123182 0.69 0.734923
Target:  5'- -gGUACCUC-UCCagcugcggucgcggCGGCGACCGaucugCGGc -3'
miRNA:   3'- agCAUGGAGuAGG--------------GCCGCUGGCa----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.