miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 3' -57.3 NC_005337.1 + 103985 0.67 0.827407
Target:  5'- -gGUGCCggcCGUCCUGGCGcucaccugcgcGCCGU-GGa -3'
miRNA:   3'- agCAUGGa--GUAGGGCCGC-----------UGGCAgCC- -5'
25676 3' -57.3 NC_005337.1 + 88257 0.66 0.858951
Target:  5'- gCGUGCCggcgCgCCGGCGggcGCCG-CGGa -3'
miRNA:   3'- aGCAUGGaguaG-GGCCGC---UGGCaGCC- -5'
25676 3' -57.3 NC_005337.1 + 127414 0.66 0.880579
Target:  5'- aCGcUGCUgcacCA-CCUGGCGACCGUgccgCGGg -3'
miRNA:   3'- aGC-AUGGa---GUaGGGCCGCUGGCA----GCC- -5'
25676 3' -57.3 NC_005337.1 + 120116 0.68 0.784226
Target:  5'- gUCGUACaUCG-CCCGGCuGCCGaaGGa -3'
miRNA:   3'- -AGCAUGgAGUaGGGCCGcUGGCagCC- -5'
25676 3' -57.3 NC_005337.1 + 68389 0.71 0.619387
Target:  5'- cCGU-CCUCggUCaCGGCGACCG-CGGc -3'
miRNA:   3'- aGCAuGGAGuaGG-GCCGCUGGCaGCC- -5'
25676 3' -57.3 NC_005337.1 + 109828 0.7 0.659366
Target:  5'- aCGUACUg---CCCGGCGGCgGUCu- -3'
miRNA:   3'- aGCAUGGaguaGGGCCGCUGgCAGcc -5'
25676 3' -57.3 NC_005337.1 + 70699 0.66 0.887372
Target:  5'- -aGUuCCUCA--CCGGCGACCG-CGc -3'
miRNA:   3'- agCAuGGAGUagGGCCGCUGGCaGCc -5'
25676 3' -57.3 NC_005337.1 + 133054 0.66 0.879888
Target:  5'- uUCGUaGCUUCGUCcgcguacgcggcgCCGGUGGCCGcCuGGa -3'
miRNA:   3'- -AGCA-UGGAGUAG-------------GGCCGCUGGCaG-CC- -5'
25676 3' -57.3 NC_005337.1 + 91181 0.69 0.699008
Target:  5'- aCGaACUUCAUCCCgGGCG-CCGcgaugCGGa -3'
miRNA:   3'- aGCaUGGAGUAGGG-CCGCuGGCa----GCC- -5'
25676 3' -57.3 NC_005337.1 + 52088 0.68 0.756688
Target:  5'- cCGUGCg-CG-CCCGGCGGCCG-CGu -3'
miRNA:   3'- aGCAUGgaGUaGGGCCGCUGGCaGCc -5'
25676 3' -57.3 NC_005337.1 + 93286 0.68 0.756688
Target:  5'- -gGUGCgUCGgcgCCUGGUGGCgGUCGa -3'
miRNA:   3'- agCAUGgAGUa--GGGCCGCUGgCAGCc -5'
25676 3' -57.3 NC_005337.1 + 59167 0.68 0.775166
Target:  5'- aCGUuCCUCc-CCCaGGcCGugCGUCGGg -3'
miRNA:   3'- aGCAuGGAGuaGGG-CC-GCugGCAGCC- -5'
25676 3' -57.3 NC_005337.1 + 125410 0.68 0.801946
Target:  5'- gCGUGCCgUCAUgCaCGGCGG-CGUCaGGg -3'
miRNA:   3'- aGCAUGG-AGUAgG-GCCGCUgGCAG-CC- -5'
25676 3' -57.3 NC_005337.1 + 87586 0.68 0.801946
Target:  5'- gUCGccgACC---UCCCGGCG-CCGcUCGGg -3'
miRNA:   3'- -AGCa--UGGaguAGGGCCGCuGGC-AGCC- -5'
25676 3' -57.3 NC_005337.1 + 98758 0.67 0.851343
Target:  5'- cUGcACCUCGUCaCCGGCagcGCCGU-GGa -3'
miRNA:   3'- aGCaUGGAGUAG-GGCCGc--UGGCAgCC- -5'
25676 3' -57.3 NC_005337.1 + 22714 0.67 0.851343
Target:  5'- gUCGcACCUCGUCUaCGGC-ACCGcCGa -3'
miRNA:   3'- -AGCaUGGAGUAGG-GCCGcUGGCaGCc -5'
25676 3' -57.3 NC_005337.1 + 54232 0.66 0.858951
Target:  5'- gCGUAgaucuCCUCGUCCgGcGCGuCCGggcCGGg -3'
miRNA:   3'- aGCAU-----GGAGUAGGgC-CGCuGGCa--GCC- -5'
25676 3' -57.3 NC_005337.1 + 2520 0.66 0.873575
Target:  5'- cCGcACCUCGgaggCCCGGaCGuCCGggcccCGGg -3'
miRNA:   3'- aGCaUGGAGUa---GGGCC-GCuGGCa----GCC- -5'
25676 3' -57.3 NC_005337.1 + 36430 0.66 0.873575
Target:  5'- gCGcGCCUCA-CCCGGCugcaGCUGcgCGGg -3'
miRNA:   3'- aGCaUGGAGUaGGGCCGc---UGGCa-GCC- -5'
25676 3' -57.3 NC_005337.1 + 84518 0.66 0.873575
Target:  5'- cUCGUgGCCUCcgagGUCCCcgaggacgcGGCGGCUGU-GGa -3'
miRNA:   3'- -AGCA-UGGAG----UAGGG---------CCGCUGGCAgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.