miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 5' -56.7 NC_005337.1 + 68871 0.66 0.874448
Target:  5'- gCGCCgGAGAacaUCUUCGCGcAGCuGGC-CAa -3'
miRNA:   3'- -GCGG-CUCU---AGGAGUGCuUCG-CCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 9323 0.66 0.874448
Target:  5'- uGCCGAGA-CCg-GCGAcGCGGgaCAu -3'
miRNA:   3'- gCGGCUCUaGGagUGCUuCGCCgaGU- -5'
25676 5' -56.7 NC_005337.1 + 24749 0.66 0.874448
Target:  5'- cCGCCaucGcgCCgCGCG-GGCGGCUCAc -3'
miRNA:   3'- -GCGGcu-CuaGGaGUGCuUCGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 65682 0.66 0.872261
Target:  5'- gCGgCGAGAcCCUCgACGAGGCGucggugcuggccgaGCUCc -3'
miRNA:   3'- -GCgGCUCUaGGAG-UGCUUCGC--------------CGAGu -5'
25676 5' -56.7 NC_005337.1 + 33201 0.66 0.867083
Target:  5'- gGUCGAguccuugaaGAUCUUCACGcagguGCGGUUCGu -3'
miRNA:   3'- gCGGCU---------CUAGGAGUGCuu---CGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 1152 0.66 0.867083
Target:  5'- cCGCgGGGAgcgcgCCg-GCGGAGCGGCcCGc -3'
miRNA:   3'- -GCGgCUCUa----GGagUGCUUCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 124821 0.66 0.867083
Target:  5'- gCGCCGguuccAGuUCCUCAacuucauGCGGCUCGu -3'
miRNA:   3'- -GCGGC-----UCuAGGAGUgcuu---CGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 34719 0.66 0.859505
Target:  5'- aGCCGcAGGgccUCCUCGCGcgagcagucGGCGGCgCAc -3'
miRNA:   3'- gCGGC-UCU---AGGAGUGCu--------UCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 43919 0.66 0.851722
Target:  5'- uGCCGGGcUCCgcuguaCGCGAccuucaacuGGCGGUUCc -3'
miRNA:   3'- gCGGCUCuAGGa-----GUGCU---------UCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 17989 0.66 0.84374
Target:  5'- aGCCGAGGuacUCCUCgaucaccgGCGGAGCcauGGCa-- -3'
miRNA:   3'- gCGGCUCU---AGGAG--------UGCUUCG---CCGagu -5'
25676 5' -56.7 NC_005337.1 + 53650 0.66 0.84374
Target:  5'- gCGCCGuGAUCgC-CGCGAugcagcgcgucGGCGGCcgCAa -3'
miRNA:   3'- -GCGGCuCUAG-GaGUGCU-----------UCGCCGa-GU- -5'
25676 5' -56.7 NC_005337.1 + 99190 0.66 0.84374
Target:  5'- gCGUCGAGAUCCgCGcCGGAGaCGcGUUCu -3'
miRNA:   3'- -GCGGCUCUAGGaGU-GCUUC-GC-CGAGu -5'
25676 5' -56.7 NC_005337.1 + 36816 0.66 0.84293
Target:  5'- uCGCCGguuuccugauuccGGAggcuaucugCUUUACGAAGUGGUUCAu -3'
miRNA:   3'- -GCGGC-------------UCUa--------GGAGUGCUUCGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 23717 0.67 0.835564
Target:  5'- uCGCgGAcAUCCUgaccgccgcCGCGGAGCGGCagCAg -3'
miRNA:   3'- -GCGgCUcUAGGA---------GUGCUUCGCCGa-GU- -5'
25676 5' -56.7 NC_005337.1 + 42447 0.67 0.827203
Target:  5'- gGCCGAGuacggggagUUCGCGAAGCGGUa-- -3'
miRNA:   3'- gCGGCUCuag------GAGUGCUUCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 28982 0.67 0.827203
Target:  5'- gGCCGAGAggUUCGCGAAGaUGaGCUUc -3'
miRNA:   3'- gCGGCUCUagGAGUGCUUC-GC-CGAGu -5'
25676 5' -56.7 NC_005337.1 + 5901 0.67 0.827203
Target:  5'- aCGCgGAGcgCgUCgcagGCGAAGUGGUUCu -3'
miRNA:   3'- -GCGgCUCuaGgAG----UGCUUCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 29675 0.67 0.827203
Target:  5'- gGCCcgaagaAGAUCCgggcCGCGAAG-GGCUCGu -3'
miRNA:   3'- gCGGc-----UCUAGGa---GUGCUUCgCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 115840 0.67 0.827203
Target:  5'- cCGCCc--GUgCUCaagGCGGAGCGGCUCu -3'
miRNA:   3'- -GCGGcucUAgGAG---UGCUUCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 24737 0.67 0.827203
Target:  5'- uGCUGaAGAUCCUCGCGcuGCaGCa-- -3'
miRNA:   3'- gCGGC-UCUAGGAGUGCuuCGcCGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.