miRNA display CGI


Results 41 - 60 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 5' -56.7 NC_005337.1 + 88763 0.68 0.748829
Target:  5'- aCGCCGAGGacccggaggcgcaggUCCgCGCguaccaGAAGCGGCUgCAg -3'
miRNA:   3'- -GCGGCUCU---------------AGGaGUG------CUUCGCCGA-GU- -5'
25676 5' -56.7 NC_005337.1 + 73029 0.68 0.744954
Target:  5'- cCGUCGAGGUCaCggagggCACGcuGCGGCUg- -3'
miRNA:   3'- -GCGGCUCUAG-Ga-----GUGCuuCGCCGAgu -5'
25676 5' -56.7 NC_005337.1 + 106651 0.68 0.75461
Target:  5'- cCGCCaAGAUCCcggagCGCGA-GCGGCg-- -3'
miRNA:   3'- -GCGGcUCUAGGa----GUGCUuCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 109030 0.68 0.763209
Target:  5'- gCGUgGAGAUCCUgcggucgCugGAGGaCGaGCUCAc -3'
miRNA:   3'- -GCGgCUCUAGGA-------GugCUUC-GC-CGAGU- -5'
25676 5' -56.7 NC_005337.1 + 83257 0.68 0.744954
Target:  5'- aGCCG-GAgCCUgACu-GGCGGCUCGa -3'
miRNA:   3'- gCGGCuCUaGGAgUGcuUCGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 75706 0.68 0.744954
Target:  5'- uGCCGGuGAcgUUCACGAAG-GGCUCGa -3'
miRNA:   3'- gCGGCU-CUagGAGUGCUUCgCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 73517 0.68 0.764158
Target:  5'- uGCUGGGcaCC-CGCGAGGCGGCa-- -3'
miRNA:   3'- gCGGCUCuaGGaGUGCUUCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 78378 0.68 0.764158
Target:  5'- aCGCUGAGGcCCUCGCGGAuGCuGCgccgCAc -3'
miRNA:   3'- -GCGGCUCUaGGAGUGCUU-CGcCGa---GU- -5'
25676 5' -56.7 NC_005337.1 + 81409 0.68 0.764158
Target:  5'- gCGuuGucccGGUCUucguUCACGAAGCGGgUCAa -3'
miRNA:   3'- -GCggCu---CUAGG----AGUGCUUCGCCgAGU- -5'
25676 5' -56.7 NC_005337.1 + 51056 0.68 0.764158
Target:  5'- -cCCGuGAUCUUC-CGcAGCGGCUCc -3'
miRNA:   3'- gcGGCuCUAGGAGuGCuUCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 29526 0.68 0.773589
Target:  5'- aGCaCGGcGGUCUUCGCGcGGCGGC-CGu -3'
miRNA:   3'- gCG-GCU-CUAGGAGUGCuUCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 74900 0.68 0.782893
Target:  5'- aCGCCGGGggCgUgAUGgcGCGGCUg- -3'
miRNA:   3'- -GCGGCUCuaGgAgUGCuuCGCCGAgu -5'
25676 5' -56.7 NC_005337.1 + 96769 0.69 0.69537
Target:  5'- uCGCCGAGGUgUUCcCGggGuCGGCg-- -3'
miRNA:   3'- -GCGGCUCUAgGAGuGCuuC-GCCGagu -5'
25676 5' -56.7 NC_005337.1 + 27633 0.69 0.705429
Target:  5'- -uCCGGGAUCUUgGCGGAGCGcGC-CAc -3'
miRNA:   3'- gcGGCUCUAGGAgUGCUUCGC-CGaGU- -5'
25676 5' -56.7 NC_005337.1 + 18616 0.69 0.689309
Target:  5'- aGCCGAGGgcuuucuucgcacacUCCUCgGCGAuGGCGGC-CGc -3'
miRNA:   3'- gCGGCUCU---------------AGGAG-UGCU-UCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 81800 0.69 0.705429
Target:  5'- aGCCGGc--UCUCGCGGGcgccGCGGCUCAg -3'
miRNA:   3'- gCGGCUcuaGGAGUGCUU----CGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 118981 0.69 0.705429
Target:  5'- uCGCCGuuguGAUCgUCAUGAuggugaAGCGGCgCAu -3'
miRNA:   3'- -GCGGCu---CUAGgAGUGCU------UCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 29015 0.69 0.725353
Target:  5'- -cUCGAGcgCCUCgACGAGGCGGgcCUCGu -3'
miRNA:   3'- gcGGCUCuaGGAG-UGCUUCGCC--GAGU- -5'
25676 5' -56.7 NC_005337.1 + 127961 0.7 0.644456
Target:  5'- gGCgGAGAUCCgcgccaugCGCGAGGUGcGCUgCAa -3'
miRNA:   3'- gCGgCUCUAGGa-------GUGCUUCGC-CGA-GU- -5'
25676 5' -56.7 NC_005337.1 + 9391 0.7 0.63421
Target:  5'- aCGgCGAGGUCCUCGgaggcCGuAGGCGGCa-- -3'
miRNA:   3'- -GCgGCUCUAGGAGU-----GC-UUCGCCGagu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.