miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 5' -56.7 NC_005337.1 + 109030 0.68 0.763209
Target:  5'- gCGUgGAGAUCCUgcggucgCugGAGGaCGaGCUCAc -3'
miRNA:   3'- -GCGgCUCUAGGA-------GugCUUC-GC-CGAGU- -5'
25676 5' -56.7 NC_005337.1 + 106651 0.68 0.75461
Target:  5'- cCGCCaAGAUCCcggagCGCGA-GCGGCg-- -3'
miRNA:   3'- -GCGGcUCUAGGa----GUGCUuCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 124300 0.68 0.75461
Target:  5'- gGCCGAGGacgcggCCUC-CGucGCGGCgCAg -3'
miRNA:   3'- gCGGCUCUa-----GGAGuGCuuCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 29526 0.68 0.773589
Target:  5'- aGCaCGGcGGUCUUCGCGcGGCGGC-CGu -3'
miRNA:   3'- gCG-GCU-CUAGGAGUGCuUCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 73029 0.68 0.744954
Target:  5'- cCGUCGAGGUCaCggagggCACGcuGCGGCUg- -3'
miRNA:   3'- -GCGGCUCUAG-Ga-----GUGCuuCGCCGAgu -5'
25676 5' -56.7 NC_005337.1 + 88763 0.68 0.748829
Target:  5'- aCGCCGAGGacccggaggcgcaggUCCgCGCguaccaGAAGCGGCUgCAg -3'
miRNA:   3'- -GCGGCUCU---------------AGGaGUG------CUUCGCCGA-GU- -5'
25676 5' -56.7 NC_005337.1 + 52474 0.68 0.744954
Target:  5'- aGCCGcGGcgCC-CGCGAgAGCcGGCUCAu -3'
miRNA:   3'- gCGGC-UCuaGGaGUGCU-UCG-CCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 59653 0.68 0.75461
Target:  5'- cCGCCGGGGaaCaUCACGucgucGCGGCUCc -3'
miRNA:   3'- -GCGGCUCUagG-AGUGCuu---CGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 101546 0.67 0.809076
Target:  5'- cCGCCGccagcguGGAcuUCCUCAaGGAGCuGCUCGu -3'
miRNA:   3'- -GCGGC-------UCU--AGGAGUgCUUCGcCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 44455 0.67 0.809956
Target:  5'- aCGUCGAGcgCCUCGCcGAGCuggaGGC-CAg -3'
miRNA:   3'- -GCGGCUCuaGGAGUGcUUCG----CCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 74987 0.67 0.809956
Target:  5'- gGCCGGGucgaCCacguaCACGAGGCGGC-CGc -3'
miRNA:   3'- gCGGCUCua--GGa----GUGCUUCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 102792 0.67 0.809956
Target:  5'- aCGCCGGGuucaaccacgCCuUCGCGgcGCuGCUCAg -3'
miRNA:   3'- -GCGGCUCua--------GG-AGUGCuuCGcCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 86165 0.67 0.818664
Target:  5'- gGaCC-AGGUCUUCACGAAGC-GCUCc -3'
miRNA:   3'- gC-GGcUCUAGGAGUGCUUCGcCGAGu -5'
25676 5' -56.7 NC_005337.1 + 18775 0.67 0.818664
Target:  5'- uCGUCGA---CCUCGCGAGGcCGGCgCAc -3'
miRNA:   3'- -GCGGCUcuaGGAGUGCUUC-GCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 133130 0.67 0.818664
Target:  5'- aGCUGuGAUCCcCGCGGAGCuGgUCGc -3'
miRNA:   3'- gCGGCuCUAGGaGUGCUUCGcCgAGU- -5'
25676 5' -56.7 NC_005337.1 + 24737 0.67 0.827203
Target:  5'- uGCUGaAGAUCCUCGCGcuGCaGCa-- -3'
miRNA:   3'- gCGGC-UCUAGGAGUGCuuCGcCGagu -5'
25676 5' -56.7 NC_005337.1 + 5901 0.67 0.827203
Target:  5'- aCGCgGAGcgCgUCgcagGCGAAGUGGUUCu -3'
miRNA:   3'- -GCGgCUCuaGgAG----UGCUUCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 28982 0.67 0.827203
Target:  5'- gGCCGAGAggUUCGCGAAGaUGaGCUUc -3'
miRNA:   3'- gCGGCUCUagGAGUGCUUC-GC-CGAGu -5'
25676 5' -56.7 NC_005337.1 + 42447 0.67 0.827203
Target:  5'- gGCCGAGuacggggagUUCGCGAAGCGGUa-- -3'
miRNA:   3'- gCGGCUCuag------GAGUGCUUCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 39944 0.67 0.801085
Target:  5'- gCGgCGGGcgCCUCGCGcGGGC-GCUCGa -3'
miRNA:   3'- -GCgGCUCuaGGAGUGC-UUCGcCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.