miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 5' -56.7 NC_005337.1 + 42404 1.09 0.002251
Target:  5'- cCGCCGAGAUCCUCACGAAGCGGCUCAa -3'
miRNA:   3'- -GCGGCUCUAGGAGUGCUUCGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 114698 0.77 0.294551
Target:  5'- aGUgGAGAUCCUCGC---GCGGCUCAc -3'
miRNA:   3'- gCGgCUCUAGGAGUGcuuCGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 85874 0.76 0.3534
Target:  5'- aCGCCGAGcgUCUC-CGugcGCGGCUCGa -3'
miRNA:   3'- -GCGGCUCuaGGAGuGCuu-CGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 88293 0.75 0.385794
Target:  5'- gGCCGAGAUggagGCGGAGCGGCUCc -3'
miRNA:   3'- gCGGCUCUAggagUGCUUCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 100774 0.74 0.40271
Target:  5'- gGCgGAGAUCUUCGaccaGGAGCGGcCUCGc -3'
miRNA:   3'- gCGgCUCUAGGAGUg---CUUCGCC-GAGU- -5'
25676 5' -56.7 NC_005337.1 + 16898 0.74 0.410474
Target:  5'- aCGCCGAGGUCCaggaucuUCugGAccAGCacgGGCUCGu -3'
miRNA:   3'- -GCGGCUCUAGG-------AGugCU--UCG---CCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 25093 0.74 0.420089
Target:  5'- aCGCCGAGcUCCgcccgCGCGgcGCGGCg-- -3'
miRNA:   3'- -GCGGCUCuAGGa----GUGCuuCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 90609 0.73 0.503486
Target:  5'- gCGCCGaAGAgcagCUUCACGAAGuCGGCg-- -3'
miRNA:   3'- -GCGGC-UCUa---GGAGUGCUUC-GCCGagu -5'
25676 5' -56.7 NC_005337.1 + 99108 0.72 0.51321
Target:  5'- uCGUCGAuagCCUCGCGAGcCGGCUCGu -3'
miRNA:   3'- -GCGGCUcuaGGAGUGCUUcGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 42896 0.72 0.542818
Target:  5'- cCGCCGAGGUCUUCG---AGCgGGCUCc -3'
miRNA:   3'- -GCGGCUCUAGGAGUgcuUCG-CCGAGu -5'
25676 5' -56.7 NC_005337.1 + 111640 0.72 0.552815
Target:  5'- gCGCCGaAGG-CCUCGCGGAuccgcGCcGGCUCGa -3'
miRNA:   3'- -GCGGC-UCUaGGAGUGCUU-----CG-CCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 111427 0.71 0.562867
Target:  5'- gCGCCGcGGUCCagCACGA-GCGGgUCGu -3'
miRNA:   3'- -GCGGCuCUAGGa-GUGCUuCGCCgAGU- -5'
25676 5' -56.7 NC_005337.1 + 66798 0.71 0.572967
Target:  5'- aGCCGcGAgacgcCCUCgACGAAGCGGCg-- -3'
miRNA:   3'- gCGGCuCUa----GGAG-UGCUUCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 100881 0.71 0.572967
Target:  5'- cCGCCaGAGcuaCUUCGCGggGCGGCg-- -3'
miRNA:   3'- -GCGG-CUCua-GGAGUGCuuCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 81361 0.71 0.58311
Target:  5'- uCGCCGAgGAUCCgugCGCGGuuCGGCUg- -3'
miRNA:   3'- -GCGGCU-CUAGGa--GUGCUucGCCGAgu -5'
25676 5' -56.7 NC_005337.1 + 77062 0.71 0.593287
Target:  5'- cCGCCGAG-UUUUCGCGGGcGCGGCa-- -3'
miRNA:   3'- -GCGGCUCuAGGAGUGCUU-CGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 17854 0.71 0.603493
Target:  5'- cCGCCGAGcUUCUUgaagaaGCGGcGGCGGCUCu -3'
miRNA:   3'- -GCGGCUCuAGGAG------UGCU-UCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 29049 0.71 0.603493
Target:  5'- aGCCGGGcgCC-CGCGAGcGCGcaGCUCAg -3'
miRNA:   3'- gCGGCUCuaGGaGUGCUU-CGC--CGAGU- -5'
25676 5' -56.7 NC_005337.1 + 35269 0.71 0.613721
Target:  5'- gGCCGcGcgcaCCUCGgGggGCGGCUCc -3'
miRNA:   3'- gCGGCuCua--GGAGUgCuuCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 89833 0.7 0.623962
Target:  5'- gCGCuCGAcGUCCUC-CGGcGGCGGCUCc -3'
miRNA:   3'- -GCG-GCUcUAGGAGuGCU-UCGCCGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.