miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 5' -56.7 NC_005337.1 + 86165 0.67 0.818664
Target:  5'- gGaCC-AGGUCUUCACGAAGC-GCUCc -3'
miRNA:   3'- gC-GGcUCUAGGAGUGCUUCGcCGAGu -5'
25676 5' -56.7 NC_005337.1 + 133130 0.67 0.818664
Target:  5'- aGCUGuGAUCCcCGCGGAGCuGgUCGc -3'
miRNA:   3'- gCGGCuCUAGGaGUGCUUCGcCgAGU- -5'
25676 5' -56.7 NC_005337.1 + 18775 0.67 0.818664
Target:  5'- uCGUCGA---CCUCGCGAGGcCGGCgCAc -3'
miRNA:   3'- -GCGGCUcuaGGAGUGCUUC-GCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 44455 0.67 0.809956
Target:  5'- aCGUCGAGcgCCUCGCcGAGCuggaGGC-CAg -3'
miRNA:   3'- -GCGGCUCuaGGAGUGcUUCG----CCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 102792 0.67 0.809956
Target:  5'- aCGCCGGGuucaaccacgCCuUCGCGgcGCuGCUCAg -3'
miRNA:   3'- -GCGGCUCua--------GG-AGUGCuuCGcCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 74987 0.67 0.809956
Target:  5'- gGCCGGGucgaCCacguaCACGAGGCGGC-CGc -3'
miRNA:   3'- gCGGCUCua--GGa----GUGCUUCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 58823 0.67 0.809956
Target:  5'- gCGCC-AGAUCgUCgggcGCGccguGCGGCUCAa -3'
miRNA:   3'- -GCGGcUCUAGgAG----UGCuu--CGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 101546 0.67 0.809076
Target:  5'- cCGCCGccagcguGGAcuUCCUCAaGGAGCuGCUCGu -3'
miRNA:   3'- -GCGGC-------UCU--AGGAGUgCUUCGcCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 34831 0.67 0.801085
Target:  5'- gCGCguccaCGAGGUggCC-CACGccGCGGCUCAg -3'
miRNA:   3'- -GCG-----GCUCUA--GGaGUGCuuCGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 120447 0.67 0.801085
Target:  5'- -cCCGAG-UCCcUGCGggGCGcGCUCGa -3'
miRNA:   3'- gcGGCUCuAGGaGUGCuuCGC-CGAGU- -5'
25676 5' -56.7 NC_005337.1 + 111592 0.67 0.801085
Target:  5'- gCGCCGuucAGGUCCaugucCGCGAAGC-GCUCc -3'
miRNA:   3'- -GCGGC---UCUAGGa----GUGCUUCGcCGAGu -5'
25676 5' -56.7 NC_005337.1 + 93630 0.67 0.801085
Target:  5'- -uCCGAGGUCUUCAUGAAguucagcaagucGCGGC-CGg -3'
miRNA:   3'- gcGGCUCUAGGAGUGCUU------------CGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 39944 0.67 0.801085
Target:  5'- gCGgCGGGcgCCUCGCGcGGGC-GCUCGa -3'
miRNA:   3'- -GCgGCUCuaGGAGUGC-UUCGcCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 74900 0.68 0.782893
Target:  5'- aCGCCGGGggCgUgAUGgcGCGGCUg- -3'
miRNA:   3'- -GCGGCUCuaGgAgUGCuuCGCCGAgu -5'
25676 5' -56.7 NC_005337.1 + 119855 0.68 0.773589
Target:  5'- cCGCaCGuGucUCCUgGCGgcGCGGUUCAg -3'
miRNA:   3'- -GCG-GCuCu-AGGAgUGCuuCGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 29526 0.68 0.773589
Target:  5'- aGCaCGGcGGUCUUCGCGcGGCGGC-CGu -3'
miRNA:   3'- gCG-GCU-CUAGGAGUGCuUCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 73517 0.68 0.764158
Target:  5'- uGCUGGGcaCC-CGCGAGGCGGCa-- -3'
miRNA:   3'- gCGGCUCuaGGaGUGCUUCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 78378 0.68 0.764158
Target:  5'- aCGCUGAGGcCCUCGCGGAuGCuGCgccgCAc -3'
miRNA:   3'- -GCGGCUCUaGGAGUGCUU-CGcCGa---GU- -5'
25676 5' -56.7 NC_005337.1 + 81409 0.68 0.764158
Target:  5'- gCGuuGucccGGUCUucguUCACGAAGCGGgUCAa -3'
miRNA:   3'- -GCggCu---CUAGG----AGUGCUUCGCCgAGU- -5'
25676 5' -56.7 NC_005337.1 + 51056 0.68 0.764158
Target:  5'- -cCCGuGAUCUUC-CGcAGCGGCUCc -3'
miRNA:   3'- gcGGCuCUAGGAGuGCuUCGCCGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.