miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 5' -56.7 NC_005337.1 + 1152 0.66 0.867083
Target:  5'- cCGCgGGGAgcgcgCCg-GCGGAGCGGCcCGc -3'
miRNA:   3'- -GCGgCUCUa----GGagUGCUUCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 5901 0.67 0.827203
Target:  5'- aCGCgGAGcgCgUCgcagGCGAAGUGGUUCu -3'
miRNA:   3'- -GCGgCUCuaGgAG----UGCUUCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 9323 0.66 0.874448
Target:  5'- uGCCGAGA-CCg-GCGAcGCGGgaCAu -3'
miRNA:   3'- gCGGCUCUaGGagUGCUuCGCCgaGU- -5'
25676 5' -56.7 NC_005337.1 + 9391 0.7 0.63421
Target:  5'- aCGgCGAGGUCCUCGgaggcCGuAGGCGGCa-- -3'
miRNA:   3'- -GCgGCUCUAGGAGU-----GC-UUCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 16898 0.74 0.410474
Target:  5'- aCGCCGAGGUCCaggaucuUCugGAccAGCacgGGCUCGu -3'
miRNA:   3'- -GCGGCUCUAGG-------AGugCU--UCG---CCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 17854 0.71 0.603493
Target:  5'- cCGCCGAGcUUCUUgaagaaGCGGcGGCGGCUCu -3'
miRNA:   3'- -GCGGCUCuAGGAG------UGCU-UCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 17989 0.66 0.84374
Target:  5'- aGCCGAGGuacUCCUCgaucaccgGCGGAGCcauGGCa-- -3'
miRNA:   3'- gCGGCUCU---AGGAG--------UGCUUCG---CCGagu -5'
25676 5' -56.7 NC_005337.1 + 18616 0.69 0.689309
Target:  5'- aGCCGAGGgcuuucuucgcacacUCCUCgGCGAuGGCGGC-CGc -3'
miRNA:   3'- gCGGCUCU---------------AGGAG-UGCU-UCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 18775 0.67 0.818664
Target:  5'- uCGUCGA---CCUCGCGAGGcCGGCgCAc -3'
miRNA:   3'- -GCGGCUcuaGGAGUGCUUC-GCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 19146 0.68 0.744954
Target:  5'- aGcCCGGGAUgCUCACGGAGaucuCGGC-CAc -3'
miRNA:   3'- gC-GGCUCUAgGAGUGCUUC----GCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 23717 0.67 0.835564
Target:  5'- uCGCgGAcAUCCUgaccgccgcCGCGGAGCGGCagCAg -3'
miRNA:   3'- -GCGgCUcUAGGA---------GUGCUUCGCCGa-GU- -5'
25676 5' -56.7 NC_005337.1 + 24737 0.67 0.827203
Target:  5'- uGCUGaAGAUCCUCGCGcuGCaGCa-- -3'
miRNA:   3'- gCGGC-UCUAGGAGUGCuuCGcCGagu -5'
25676 5' -56.7 NC_005337.1 + 24749 0.66 0.874448
Target:  5'- cCGCCaucGcgCCgCGCG-GGCGGCUCAc -3'
miRNA:   3'- -GCGGcu-CuaGGaGUGCuUCGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 24794 0.7 0.644456
Target:  5'- uCGCCGAGAUCCg---GAAGCGcGCcCAc -3'
miRNA:   3'- -GCGGCUCUAGGagugCUUCGC-CGaGU- -5'
25676 5' -56.7 NC_005337.1 + 25093 0.74 0.420089
Target:  5'- aCGCCGAGcUCCgcccgCGCGgcGCGGCg-- -3'
miRNA:   3'- -GCGGCUCuAGGa----GUGCuuCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 27633 0.69 0.705429
Target:  5'- -uCCGGGAUCUUgGCGGAGCGcGC-CAc -3'
miRNA:   3'- gcGGCUCUAGGAgUGCUUCGC-CGaGU- -5'
25676 5' -56.7 NC_005337.1 + 28982 0.67 0.827203
Target:  5'- gGCCGAGAggUUCGCGAAGaUGaGCUUc -3'
miRNA:   3'- gCGGCUCUagGAGUGCUUC-GC-CGAGu -5'
25676 5' -56.7 NC_005337.1 + 29015 0.69 0.725353
Target:  5'- -cUCGAGcgCCUCgACGAGGCGGgcCUCGu -3'
miRNA:   3'- gcGGCUCuaGGAG-UGCUUCGCC--GAGU- -5'
25676 5' -56.7 NC_005337.1 + 29049 0.71 0.603493
Target:  5'- aGCCGGGcgCC-CGCGAGcGCGcaGCUCAg -3'
miRNA:   3'- gCGGCUCuaGGaGUGCUU-CGC--CGAGU- -5'
25676 5' -56.7 NC_005337.1 + 29526 0.68 0.773589
Target:  5'- aGCaCGGcGGUCUUCGCGcGGCGGC-CGu -3'
miRNA:   3'- gCG-GCU-CUAGGAGUGCuUCGCCGaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.