miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 5' -56.7 NC_005337.1 + 29675 0.67 0.827203
Target:  5'- gGCCcgaagaAGAUCCgggcCGCGAAG-GGCUCGu -3'
miRNA:   3'- gCGGc-----UCUAGGa---GUGCUUCgCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 33201 0.66 0.867083
Target:  5'- gGUCGAguccuugaaGAUCUUCACGcagguGCGGUUCGu -3'
miRNA:   3'- gCGGCU---------CUAGGAGUGCuu---CGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 34719 0.66 0.859505
Target:  5'- aGCCGcAGGgccUCCUCGCGcgagcagucGGCGGCgCAc -3'
miRNA:   3'- gCGGC-UCU---AGGAGUGCu--------UCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 34831 0.67 0.801085
Target:  5'- gCGCguccaCGAGGUggCC-CACGccGCGGCUCAg -3'
miRNA:   3'- -GCG-----GCUCUA--GGaGUGCuuCGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 35269 0.71 0.613721
Target:  5'- gGCCGcGcgcaCCUCGgGggGCGGCUCc -3'
miRNA:   3'- gCGGCuCua--GGAGUgCuuCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 36816 0.66 0.84293
Target:  5'- uCGCCGguuuccugauuccGGAggcuaucugCUUUACGAAGUGGUUCAu -3'
miRNA:   3'- -GCGGC-------------UCUa--------GGAGUGCUUCGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 39944 0.67 0.801085
Target:  5'- gCGgCGGGcgCCUCGCGcGGGC-GCUCGa -3'
miRNA:   3'- -GCgGCUCuaGGAGUGC-UUCGcCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 42404 1.09 0.002251
Target:  5'- cCGCCGAGAUCCUCACGAAGCGGCUCAa -3'
miRNA:   3'- -GCGGCUCUAGGAGUGCUUCGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 42447 0.67 0.827203
Target:  5'- gGCCGAGuacggggagUUCGCGAAGCGGUa-- -3'
miRNA:   3'- gCGGCUCuag------GAGUGCUUCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 42896 0.72 0.542818
Target:  5'- cCGCCGAGGUCUUCG---AGCgGGCUCc -3'
miRNA:   3'- -GCGGCUCUAGGAGUgcuUCG-CCGAGu -5'
25676 5' -56.7 NC_005337.1 + 43919 0.66 0.851722
Target:  5'- uGCCGGGcUCCgcuguaCGCGAccuucaacuGGCGGUUCc -3'
miRNA:   3'- gCGGCUCuAGGa-----GUGCU---------UCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 44455 0.67 0.809956
Target:  5'- aCGUCGAGcgCCUCGCcGAGCuggaGGC-CAg -3'
miRNA:   3'- -GCGGCUCuaGGAGUGcUUCG----CCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 51056 0.68 0.764158
Target:  5'- -cCCGuGAUCUUC-CGcAGCGGCUCc -3'
miRNA:   3'- gcGGCuCUAGGAGuGCuUCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 52474 0.68 0.744954
Target:  5'- aGCCGcGGcgCC-CGCGAgAGCcGGCUCAu -3'
miRNA:   3'- gCGGC-UCuaGGaGUGCU-UCG-CCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 53650 0.66 0.84374
Target:  5'- gCGCCGuGAUCgC-CGCGAugcagcgcgucGGCGGCcgCAa -3'
miRNA:   3'- -GCGGCuCUAG-GaGUGCU-----------UCGCCGa-GU- -5'
25676 5' -56.7 NC_005337.1 + 58823 0.67 0.809956
Target:  5'- gCGCC-AGAUCgUCgggcGCGccguGCGGCUCAa -3'
miRNA:   3'- -GCGGcUCUAGgAG----UGCuu--CGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 59653 0.68 0.75461
Target:  5'- cCGCCGGGGaaCaUCACGucgucGCGGCUCc -3'
miRNA:   3'- -GCGGCUCUagG-AGUGCuu---CGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 65682 0.66 0.872261
Target:  5'- gCGgCGAGAcCCUCgACGAGGCGucggugcuggccgaGCUCc -3'
miRNA:   3'- -GCgGCUCUaGGAG-UGCUUCGC--------------CGAGu -5'
25676 5' -56.7 NC_005337.1 + 66798 0.71 0.572967
Target:  5'- aGCCGcGAgacgcCCUCgACGAAGCGGCg-- -3'
miRNA:   3'- gCGGCuCUa----GGAG-UGCUUCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 68871 0.66 0.874448
Target:  5'- gCGCCgGAGAacaUCUUCGCGcAGCuGGC-CAa -3'
miRNA:   3'- -GCGG-CUCU---AGGAGUGCuUCG-CCGaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.