miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 5' -56.7 NC_005337.1 + 69920 0.68 0.735198
Target:  5'- aCGCCGuaggugcgcAGAUCCuUCAcgcggauccCGAAGCGGCgCAu -3'
miRNA:   3'- -GCGGC---------UCUAGG-AGU---------GCUUCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 73029 0.68 0.744954
Target:  5'- cCGUCGAGGUCaCggagggCACGcuGCGGCUg- -3'
miRNA:   3'- -GCGGCUCUAG-Ga-----GUGCuuCGCCGAgu -5'
25676 5' -56.7 NC_005337.1 + 73517 0.68 0.764158
Target:  5'- uGCUGGGcaCC-CGCGAGGCGGCa-- -3'
miRNA:   3'- gCGGCUCuaGGaGUGCUUCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 74900 0.68 0.782893
Target:  5'- aCGCCGGGggCgUgAUGgcGCGGCUg- -3'
miRNA:   3'- -GCGGCUCuaGgAgUGCuuCGCCGAgu -5'
25676 5' -56.7 NC_005337.1 + 74987 0.67 0.809956
Target:  5'- gGCCGGGucgaCCacguaCACGAGGCGGC-CGc -3'
miRNA:   3'- gCGGCUCua--GGa----GUGCUUCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 75706 0.68 0.744954
Target:  5'- uGCCGGuGAcgUUCACGAAG-GGCUCGa -3'
miRNA:   3'- gCGGCU-CUagGAGUGCUUCgCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 77062 0.71 0.593287
Target:  5'- cCGCCGAG-UUUUCGCGGGcGCGGCa-- -3'
miRNA:   3'- -GCGGCUCuAGGAGUGCUU-CGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 78378 0.68 0.764158
Target:  5'- aCGCUGAGGcCCUCGCGGAuGCuGCgccgCAc -3'
miRNA:   3'- -GCGGCUCUaGGAGUGCUU-CGcCGa---GU- -5'
25676 5' -56.7 NC_005337.1 + 81361 0.71 0.58311
Target:  5'- uCGCCGAgGAUCCgugCGCGGuuCGGCUg- -3'
miRNA:   3'- -GCGGCU-CUAGGa--GUGCUucGCCGAgu -5'
25676 5' -56.7 NC_005337.1 + 81409 0.68 0.764158
Target:  5'- gCGuuGucccGGUCUucguUCACGAAGCGGgUCAa -3'
miRNA:   3'- -GCggCu---CUAGG----AGUGCUUCGCCgAGU- -5'
25676 5' -56.7 NC_005337.1 + 81800 0.69 0.705429
Target:  5'- aGCCGGc--UCUCGCGGGcgccGCGGCUCAg -3'
miRNA:   3'- gCGGCUcuaGGAGUGCUU----CGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 83257 0.68 0.744954
Target:  5'- aGCCG-GAgCCUgACu-GGCGGCUCGa -3'
miRNA:   3'- gCGGCuCUaGGAgUGcuUCGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 85874 0.76 0.3534
Target:  5'- aCGCCGAGcgUCUC-CGugcGCGGCUCGa -3'
miRNA:   3'- -GCGGCUCuaGGAGuGCuu-CGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 86165 0.67 0.818664
Target:  5'- gGaCC-AGGUCUUCACGAAGC-GCUCc -3'
miRNA:   3'- gC-GGcUCUAGGAGUGCUUCGcCGAGu -5'
25676 5' -56.7 NC_005337.1 + 88293 0.75 0.385794
Target:  5'- gGCCGAGAUggagGCGGAGCGGCUCc -3'
miRNA:   3'- gCGGCUCUAggagUGCUUCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 88763 0.68 0.748829
Target:  5'- aCGCCGAGGacccggaggcgcaggUCCgCGCguaccaGAAGCGGCUgCAg -3'
miRNA:   3'- -GCGGCUCU---------------AGGaGUG------CUUCGCCGA-GU- -5'
25676 5' -56.7 NC_005337.1 + 89833 0.7 0.623962
Target:  5'- gCGCuCGAcGUCCUC-CGGcGGCGGCUCc -3'
miRNA:   3'- -GCG-GCUcUAGGAGuGCU-UCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 90609 0.73 0.503486
Target:  5'- gCGCCGaAGAgcagCUUCACGAAGuCGGCg-- -3'
miRNA:   3'- -GCGGC-UCUa---GGAGUGCUUC-GCCGagu -5'
25676 5' -56.7 NC_005337.1 + 93630 0.67 0.801085
Target:  5'- -uCCGAGGUCUUCAUGAAguucagcaagucGCGGC-CGg -3'
miRNA:   3'- gcGGCUCUAGGAGUGCUU------------CGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 95751 0.68 0.735198
Target:  5'- cCGCCGugcacGAUCCcCGCGAucGCGGCg-- -3'
miRNA:   3'- -GCGGCu----CUAGGaGUGCUu-CGCCGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.