miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 5' -56.7 NC_005337.1 + 96769 0.69 0.69537
Target:  5'- uCGCCGAGGUgUUCcCGggGuCGGCg-- -3'
miRNA:   3'- -GCGGCUCUAgGAGuGCuuC-GCCGagu -5'
25676 5' -56.7 NC_005337.1 + 99108 0.72 0.51321
Target:  5'- uCGUCGAuagCCUCGCGAGcCGGCUCGu -3'
miRNA:   3'- -GCGGCUcuaGGAGUGCUUcGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 99190 0.66 0.84374
Target:  5'- gCGUCGAGAUCCgCGcCGGAGaCGcGUUCu -3'
miRNA:   3'- -GCGGCUCUAGGaGU-GCUUC-GC-CGAGu -5'
25676 5' -56.7 NC_005337.1 + 100774 0.74 0.40271
Target:  5'- gGCgGAGAUCUUCGaccaGGAGCGGcCUCGc -3'
miRNA:   3'- gCGgCUCUAGGAGUg---CUUCGCC-GAGU- -5'
25676 5' -56.7 NC_005337.1 + 100881 0.71 0.572967
Target:  5'- cCGCCaGAGcuaCUUCGCGggGCGGCg-- -3'
miRNA:   3'- -GCGG-CUCua-GGAGUGCuuCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 101546 0.67 0.809076
Target:  5'- cCGCCGccagcguGGAcuUCCUCAaGGAGCuGCUCGu -3'
miRNA:   3'- -GCGGC-------UCU--AGGAGUgCUUCGcCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 102792 0.67 0.809956
Target:  5'- aCGCCGGGuucaaccacgCCuUCGCGgcGCuGCUCAg -3'
miRNA:   3'- -GCGGCUCua--------GG-AGUGCuuCGcCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 106651 0.68 0.75461
Target:  5'- cCGCCaAGAUCCcggagCGCGA-GCGGCg-- -3'
miRNA:   3'- -GCGGcUCUAGGa----GUGCUuCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 109030 0.68 0.763209
Target:  5'- gCGUgGAGAUCCUgcggucgCugGAGGaCGaGCUCAc -3'
miRNA:   3'- -GCGgCUCUAGGA-------GugCUUC-GC-CGAGU- -5'
25676 5' -56.7 NC_005337.1 + 111427 0.71 0.562867
Target:  5'- gCGCCGcGGUCCagCACGA-GCGGgUCGu -3'
miRNA:   3'- -GCGGCuCUAGGa-GUGCUuCGCCgAGU- -5'
25676 5' -56.7 NC_005337.1 + 111592 0.67 0.801085
Target:  5'- gCGCCGuucAGGUCCaugucCGCGAAGC-GCUCc -3'
miRNA:   3'- -GCGGC---UCUAGGa----GUGCUUCGcCGAGu -5'
25676 5' -56.7 NC_005337.1 + 111640 0.72 0.552815
Target:  5'- gCGCCGaAGG-CCUCGCGGAuccgcGCcGGCUCGa -3'
miRNA:   3'- -GCGGC-UCUaGGAGUGCUU-----CG-CCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 114698 0.77 0.294551
Target:  5'- aGUgGAGAUCCUCGC---GCGGCUCAc -3'
miRNA:   3'- gCGgCUCUAGGAGUGcuuCGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 115840 0.67 0.827203
Target:  5'- cCGCCc--GUgCUCaagGCGGAGCGGCUCu -3'
miRNA:   3'- -GCGGcucUAgGAG---UGCUUCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 118981 0.69 0.705429
Target:  5'- uCGCCGuuguGAUCgUCAUGAuggugaAGCGGCgCAu -3'
miRNA:   3'- -GCGGCu---CUAGgAGUGCU------UCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 119855 0.68 0.773589
Target:  5'- cCGCaCGuGucUCCUgGCGgcGCGGUUCAg -3'
miRNA:   3'- -GCG-GCuCu-AGGAgUGCuuCGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 120447 0.67 0.801085
Target:  5'- -cCCGAG-UCCcUGCGggGCGcGCUCGa -3'
miRNA:   3'- gcGGCUCuAGGaGUGCuuCGC-CGAGU- -5'
25676 5' -56.7 NC_005337.1 + 124300 0.68 0.75461
Target:  5'- gGCCGAGGacgcggCCUC-CGucGCGGCgCAg -3'
miRNA:   3'- gCGGCUCUa-----GGAGuGCuuCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 124821 0.66 0.867083
Target:  5'- gCGCCGguuccAGuUCCUCAacuucauGCGGCUCGu -3'
miRNA:   3'- -GCGGC-----UCuAGGAGUgcuu---CGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 127961 0.7 0.644456
Target:  5'- gGCgGAGAUCCgcgccaugCGCGAGGUGcGCUgCAa -3'
miRNA:   3'- gCGgCUCUAGGa-------GUGCUUCGC-CGA-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.