miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 5' -56.7 NC_005337.1 + 51056 0.68 0.764158
Target:  5'- -cCCGuGAUCUUC-CGcAGCGGCUCc -3'
miRNA:   3'- gcGGCuCUAGGAGuGCuUCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 81800 0.69 0.705429
Target:  5'- aGCCGGc--UCUCGCGGGcgccGCGGCUCAg -3'
miRNA:   3'- gCGGCUcuaGGAGUGCUU----CGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 118981 0.69 0.705429
Target:  5'- uCGCCGuuguGAUCgUCAUGAuggugaAGCGGCgCAu -3'
miRNA:   3'- -GCGGCu---CUAGgAGUGCU------UCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 29015 0.69 0.725353
Target:  5'- -cUCGAGcgCCUCgACGAGGCGGgcCUCGu -3'
miRNA:   3'- gcGGCUCuaGGAG-UGCUUCGCC--GAGU- -5'
25676 5' -56.7 NC_005337.1 + 83257 0.68 0.744954
Target:  5'- aGCCG-GAgCCUgACu-GGCGGCUCGa -3'
miRNA:   3'- gCGGCuCUaGGAgUGcuUCGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 75706 0.68 0.744954
Target:  5'- uGCCGGuGAcgUUCACGAAG-GGCUCGa -3'
miRNA:   3'- gCGGCU-CUagGAGUGCUUCgCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 73517 0.68 0.764158
Target:  5'- uGCUGGGcaCC-CGCGAGGCGGCa-- -3'
miRNA:   3'- gCGGCUCuaGGaGUGCUUCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 78378 0.68 0.764158
Target:  5'- aCGCUGAGGcCCUCGCGGAuGCuGCgccgCAc -3'
miRNA:   3'- -GCGGCUCUaGGAGUGCUU-CGcCGa---GU- -5'
25676 5' -56.7 NC_005337.1 + 81409 0.68 0.764158
Target:  5'- gCGuuGucccGGUCUucguUCACGAAGCGGgUCAa -3'
miRNA:   3'- -GCggCu---CUAGG----AGUGCUUCGCCgAGU- -5'
25676 5' -56.7 NC_005337.1 + 27633 0.69 0.705429
Target:  5'- -uCCGGGAUCUUgGCGGAGCGcGC-CAc -3'
miRNA:   3'- gcGGCUCUAGGAgUGCUUCGC-CGaGU- -5'
25676 5' -56.7 NC_005337.1 + 96769 0.69 0.69537
Target:  5'- uCGCCGAGGUgUUCcCGggGuCGGCg-- -3'
miRNA:   3'- -GCGGCUCUAgGAGuGCuuC-GCCGagu -5'
25676 5' -56.7 NC_005337.1 + 24794 0.7 0.644456
Target:  5'- uCGCCGAGAUCCg---GAAGCGcGCcCAc -3'
miRNA:   3'- -GCGGCUCUAGGagugCUUCGC-CGaGU- -5'
25676 5' -56.7 NC_005337.1 + 16898 0.74 0.410474
Target:  5'- aCGCCGAGGUCCaggaucuUCugGAccAGCacgGGCUCGu -3'
miRNA:   3'- -GCGGCUCUAGG-------AGugCU--UCG---CCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 90609 0.73 0.503486
Target:  5'- gCGCCGaAGAgcagCUUCACGAAGuCGGCg-- -3'
miRNA:   3'- -GCGGC-UCUa---GGAGUGCUUC-GCCGagu -5'
25676 5' -56.7 NC_005337.1 + 42896 0.72 0.542818
Target:  5'- cCGCCGAGGUCUUCG---AGCgGGCUCc -3'
miRNA:   3'- -GCGGCUCUAGGAGUgcuUCG-CCGAGu -5'
25676 5' -56.7 NC_005337.1 + 100881 0.71 0.572967
Target:  5'- cCGCCaGAGcuaCUUCGCGggGCGGCg-- -3'
miRNA:   3'- -GCGG-CUCua-GGAGUGCuuCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 81361 0.71 0.58311
Target:  5'- uCGCCGAgGAUCCgugCGCGGuuCGGCUg- -3'
miRNA:   3'- -GCGGCU-CUAGGa--GUGCUucGCCGAgu -5'
25676 5' -56.7 NC_005337.1 + 77062 0.71 0.593287
Target:  5'- cCGCCGAG-UUUUCGCGGGcGCGGCa-- -3'
miRNA:   3'- -GCGGCUCuAGGAGUGCUU-CGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 29049 0.71 0.603493
Target:  5'- aGCCGGGcgCC-CGCGAGcGCGcaGCUCAg -3'
miRNA:   3'- gCGGCUCuaGGaGUGCUU-CGC--CGAGU- -5'
25676 5' -56.7 NC_005337.1 + 17854 0.71 0.603493
Target:  5'- cCGCCGAGcUUCUUgaagaaGCGGcGGCGGCUCu -3'
miRNA:   3'- -GCGGCUCuAGGAG------UGCU-UCGCCGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.