miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 5' -56.7 NC_005337.1 + 118981 0.69 0.705429
Target:  5'- uCGCCGuuguGAUCgUCAUGAuggugaAGCGGCgCAu -3'
miRNA:   3'- -GCGGCu---CUAGgAGUGCU------UCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 81800 0.69 0.705429
Target:  5'- aGCCGGc--UCUCGCGGGcgccGCGGCUCAg -3'
miRNA:   3'- gCGGCUcuaGGAGUGCUU----CGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 27633 0.69 0.705429
Target:  5'- -uCCGGGAUCUUgGCGGAGCGcGC-CAc -3'
miRNA:   3'- gcGGCUCUAGGAgUGCUUCGC-CGaGU- -5'
25676 5' -56.7 NC_005337.1 + 89833 0.7 0.623962
Target:  5'- gCGCuCGAcGUCCUC-CGGcGGCGGCUCc -3'
miRNA:   3'- -GCG-GCUcUAGGAGuGCU-UCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 9391 0.7 0.63421
Target:  5'- aCGgCGAGGUCCUCGgaggcCGuAGGCGGCa-- -3'
miRNA:   3'- -GCgGCUCUAGGAGU-----GC-UUCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 127961 0.7 0.644456
Target:  5'- gGCgGAGAUCCgcgccaugCGCGAGGUGcGCUgCAa -3'
miRNA:   3'- gCGgCUCUAGGa-------GUGCUUCGC-CGA-GU- -5'
25676 5' -56.7 NC_005337.1 + 18616 0.69 0.689309
Target:  5'- aGCCGAGGgcuuucuucgcacacUCCUCgGCGAuGGCGGC-CGc -3'
miRNA:   3'- gCGGCUCU---------------AGGAG-UGCU-UCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 69920 0.68 0.735198
Target:  5'- aCGCCGuaggugcgcAGAUCCuUCAcgcggauccCGAAGCGGCgCAu -3'
miRNA:   3'- -GCGGC---------UCUAGG-AGU---------GCUUCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 95751 0.68 0.735198
Target:  5'- cCGCCGugcacGAUCCcCGCGAucGCGGCg-- -3'
miRNA:   3'- -GCGGCu----CUAGGaGUGCUu-CGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 19146 0.68 0.744954
Target:  5'- aGcCCGGGAUgCUCACGGAGaucuCGGC-CAc -3'
miRNA:   3'- gC-GGCUCUAgGAGUGCUUC----GCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 35269 0.71 0.613721
Target:  5'- gGCCGcGcgcaCCUCGgGggGCGGCUCc -3'
miRNA:   3'- gCGGCuCua--GGAGUgCuuCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 66798 0.71 0.572967
Target:  5'- aGCCGcGAgacgcCCUCgACGAAGCGGCg-- -3'
miRNA:   3'- gCGGCuCUa----GGAG-UGCUUCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 111427 0.71 0.562867
Target:  5'- gCGCCGcGGUCCagCACGA-GCGGgUCGu -3'
miRNA:   3'- -GCGGCuCUAGGa-GUGCUuCGCCgAGU- -5'
25676 5' -56.7 NC_005337.1 + 111640 0.72 0.552815
Target:  5'- gCGCCGaAGG-CCUCGCGGAuccgcGCcGGCUCGa -3'
miRNA:   3'- -GCGGC-UCUaGGAGUGCUU-----CG-CCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 99108 0.72 0.51321
Target:  5'- uCGUCGAuagCCUCGCGAGcCGGCUCGu -3'
miRNA:   3'- -GCGGCUcuaGGAGUGCUUcGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 25093 0.74 0.420089
Target:  5'- aCGCCGAGcUCCgcccgCGCGgcGCGGCg-- -3'
miRNA:   3'- -GCGGCUCuAGGa----GUGCuuCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 88293 0.75 0.385794
Target:  5'- gGCCGAGAUggagGCGGAGCGGCUCc -3'
miRNA:   3'- gCGGCUCUAggagUGCUUCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 85874 0.76 0.3534
Target:  5'- aCGCCGAGcgUCUC-CGugcGCGGCUCGa -3'
miRNA:   3'- -GCGGCUCuaGGAGuGCuu-CGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 114698 0.77 0.294551
Target:  5'- aGUgGAGAUCCUCGC---GCGGCUCAc -3'
miRNA:   3'- gCGgCUCUAGGAGUGcuuCGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 24749 0.66 0.874448
Target:  5'- cCGCCaucGcgCCgCGCG-GGCGGCUCAc -3'
miRNA:   3'- -GCGGcu-CuaGGaGUGCuUCGCCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.