Results 61 - 80 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25676 | 5' | -56.7 | NC_005337.1 | + | 29675 | 0.67 | 0.827203 |
Target: 5'- gGCCcgaagaAGAUCCgggcCGCGAAG-GGCUCGu -3' miRNA: 3'- gCGGc-----UCUAGGa---GUGCUUCgCCGAGU- -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 88763 | 0.68 | 0.748829 |
Target: 5'- aCGCCGAGGacccggaggcgcaggUCCgCGCguaccaGAAGCGGCUgCAg -3' miRNA: 3'- -GCGGCUCU---------------AGGaGUG------CUUCGCCGA-GU- -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 73029 | 0.68 | 0.744954 |
Target: 5'- cCGUCGAGGUCaCggagggCACGcuGCGGCUg- -3' miRNA: 3'- -GCGGCUCUAG-Ga-----GUGCuuCGCCGAgu -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 114698 | 0.77 | 0.294551 |
Target: 5'- aGUgGAGAUCCUCGC---GCGGCUCAc -3' miRNA: 3'- gCGgCUCUAGGAGUGcuuCGCCGAGU- -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 85874 | 0.76 | 0.3534 |
Target: 5'- aCGCCGAGcgUCUC-CGugcGCGGCUCGa -3' miRNA: 3'- -GCGGCUCuaGGAGuGCuu-CGCCGAGU- -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 88293 | 0.75 | 0.385794 |
Target: 5'- gGCCGAGAUggagGCGGAGCGGCUCc -3' miRNA: 3'- gCGGCUCUAggagUGCUUCGCCGAGu -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 25093 | 0.74 | 0.420089 |
Target: 5'- aCGCCGAGcUCCgcccgCGCGgcGCGGCg-- -3' miRNA: 3'- -GCGGCUCuAGGa----GUGCuuCGCCGagu -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 99108 | 0.72 | 0.51321 |
Target: 5'- uCGUCGAuagCCUCGCGAGcCGGCUCGu -3' miRNA: 3'- -GCGGCUcuaGGAGUGCUUcGCCGAGU- -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 111640 | 0.72 | 0.552815 |
Target: 5'- gCGCCGaAGG-CCUCGCGGAuccgcGCcGGCUCGa -3' miRNA: 3'- -GCGGC-UCUaGGAGUGCUU-----CG-CCGAGU- -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 111427 | 0.71 | 0.562867 |
Target: 5'- gCGCCGcGGUCCagCACGA-GCGGgUCGu -3' miRNA: 3'- -GCGGCuCUAGGa-GUGCUuCGCCgAGU- -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 66798 | 0.71 | 0.572967 |
Target: 5'- aGCCGcGAgacgcCCUCgACGAAGCGGCg-- -3' miRNA: 3'- gCGGCuCUa----GGAG-UGCUUCGCCGagu -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 35269 | 0.71 | 0.613721 |
Target: 5'- gGCCGcGcgcaCCUCGgGggGCGGCUCc -3' miRNA: 3'- gCGGCuCua--GGAGUgCuuCGCCGAGu -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 89833 | 0.7 | 0.623962 |
Target: 5'- gCGCuCGAcGUCCUC-CGGcGGCGGCUCc -3' miRNA: 3'- -GCG-GCUcUAGGAGuGCU-UCGCCGAGu -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 9391 | 0.7 | 0.63421 |
Target: 5'- aCGgCGAGGUCCUCGgaggcCGuAGGCGGCa-- -3' miRNA: 3'- -GCgGCUCUAGGAGU-----GC-UUCGCCGagu -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 127961 | 0.7 | 0.644456 |
Target: 5'- gGCgGAGAUCCgcgccaugCGCGAGGUGcGCUgCAa -3' miRNA: 3'- gCGgCUCUAGGa-------GUGCUUCGC-CGA-GU- -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 18616 | 0.69 | 0.689309 |
Target: 5'- aGCCGAGGgcuuucuucgcacacUCCUCgGCGAuGGCGGC-CGc -3' miRNA: 3'- gCGGCUCU---------------AGGAG-UGCU-UCGCCGaGU- -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 69920 | 0.68 | 0.735198 |
Target: 5'- aCGCCGuaggugcgcAGAUCCuUCAcgcggauccCGAAGCGGCgCAu -3' miRNA: 3'- -GCGGC---------UCUAGG-AGU---------GCUUCGCCGaGU- -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 95751 | 0.68 | 0.735198 |
Target: 5'- cCGCCGugcacGAUCCcCGCGAucGCGGCg-- -3' miRNA: 3'- -GCGGCu----CUAGGaGUGCUu-CGCCGagu -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 19146 | 0.68 | 0.744954 |
Target: 5'- aGcCCGGGAUgCUCACGGAGaucuCGGC-CAc -3' miRNA: 3'- gC-GGCUCUAgGAGUGCUUC----GCCGaGU- -5' |
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25676 | 5' | -56.7 | NC_005337.1 | + | 52474 | 0.68 | 0.744954 |
Target: 5'- aGCCGcGGcgCC-CGCGAgAGCcGGCUCAu -3' miRNA: 3'- gCGGC-UCuaGGaGUGCU-UCG-CCGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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