miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 5' -56.7 NC_005337.1 + 18775 0.67 0.818664
Target:  5'- uCGUCGA---CCUCGCGAGGcCGGCgCAc -3'
miRNA:   3'- -GCGGCUcuaGGAGUGCUUC-GCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 77062 0.71 0.593287
Target:  5'- cCGCCGAG-UUUUCGCGGGcGCGGCa-- -3'
miRNA:   3'- -GCGGCUCuAGGAGUGCUU-CGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 81361 0.71 0.58311
Target:  5'- uCGCCGAgGAUCCgugCGCGGuuCGGCUg- -3'
miRNA:   3'- -GCGGCU-CUAGGa--GUGCUucGCCGAgu -5'
25676 5' -56.7 NC_005337.1 + 86165 0.67 0.818664
Target:  5'- gGaCC-AGGUCUUCACGAAGC-GCUCc -3'
miRNA:   3'- gC-GGcUCUAGGAGUGCUUCGcCGAGu -5'
25676 5' -56.7 NC_005337.1 + 102792 0.67 0.809956
Target:  5'- aCGCCGGGuucaaccacgCCuUCGCGgcGCuGCUCAg -3'
miRNA:   3'- -GCGGCUCua--------GG-AGUGCuuCGcCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 90609 0.73 0.503486
Target:  5'- gCGCCGaAGAgcagCUUCACGAAGuCGGCg-- -3'
miRNA:   3'- -GCGGC-UCUa---GGAGUGCUUC-GCCGagu -5'
25676 5' -56.7 NC_005337.1 + 74987 0.67 0.809956
Target:  5'- gGCCGGGucgaCCacguaCACGAGGCGGC-CGc -3'
miRNA:   3'- gCGGCUCua--GGa----GUGCUUCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 96769 0.69 0.69537
Target:  5'- uCGCCGAGGUgUUCcCGggGuCGGCg-- -3'
miRNA:   3'- -GCGGCUCUAgGAGuGCuuC-GCCGagu -5'
25676 5' -56.7 NC_005337.1 + 27633 0.69 0.705429
Target:  5'- -uCCGGGAUCUUgGCGGAGCGcGC-CAc -3'
miRNA:   3'- gcGGCUCUAGGAgUGCUUCGC-CGaGU- -5'
25676 5' -56.7 NC_005337.1 + 81800 0.69 0.705429
Target:  5'- aGCCGGc--UCUCGCGGGcgccGCGGCUCAg -3'
miRNA:   3'- gCGGCUcuaGGAGUGCUU----CGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 39944 0.67 0.801085
Target:  5'- gCGgCGGGcgCCUCGCGcGGGC-GCUCGa -3'
miRNA:   3'- -GCgGCUCuaGGAGUGC-UUCGcCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 51056 0.68 0.764158
Target:  5'- -cCCGuGAUCUUC-CGcAGCGGCUCc -3'
miRNA:   3'- gcGGCuCUAGGAGuGCuUCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 124821 0.66 0.867083
Target:  5'- gCGCCGguuccAGuUCCUCAacuucauGCGGCUCGu -3'
miRNA:   3'- -GCGGC-----UCuAGGAGUgcuu---CGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 1152 0.66 0.867083
Target:  5'- cCGCgGGGAgcgcgCCg-GCGGAGCGGCcCGc -3'
miRNA:   3'- -GCGgCUCUa----GGagUGCUUCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 65682 0.66 0.872261
Target:  5'- gCGgCGAGAcCCUCgACGAGGCGucggugcuggccgaGCUCc -3'
miRNA:   3'- -GCgGCUCUaGGAG-UGCUUCGC--------------CGAGu -5'
25676 5' -56.7 NC_005337.1 + 68871 0.66 0.874448
Target:  5'- gCGCCgGAGAacaUCUUCGCGcAGCuGGC-CAa -3'
miRNA:   3'- -GCGG-CUCU---AGGAGUGCuUCG-CCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 29526 0.68 0.773589
Target:  5'- aGCaCGGcGGUCUUCGCGcGGCGGC-CGu -3'
miRNA:   3'- gCG-GCU-CUAGGAGUGCuUCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 74900 0.68 0.782893
Target:  5'- aCGCCGGGggCgUgAUGgcGCGGCUg- -3'
miRNA:   3'- -GCGGCUCuaGgAgUGCuuCGCCGAgu -5'
25676 5' -56.7 NC_005337.1 + 29015 0.69 0.725353
Target:  5'- -cUCGAGcgCCUCgACGAGGCGGgcCUCGu -3'
miRNA:   3'- gcGGCUCuaGGAG-UGCUUCGCC--GAGU- -5'
25676 5' -56.7 NC_005337.1 + 118981 0.69 0.705429
Target:  5'- uCGCCGuuguGAUCgUCAUGAuggugaAGCGGCgCAu -3'
miRNA:   3'- -GCGGCu---CUAGgAGUGCU------UCGCCGaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.