miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25676 5' -56.7 NC_005337.1 + 81409 0.68 0.764158
Target:  5'- gCGuuGucccGGUCUucguUCACGAAGCGGgUCAa -3'
miRNA:   3'- -GCggCu---CUAGG----AGUGCUUCGCCgAGU- -5'
25676 5' -56.7 NC_005337.1 + 51056 0.68 0.764158
Target:  5'- -cCCGuGAUCUUC-CGcAGCGGCUCc -3'
miRNA:   3'- gcGGCuCUAGGAGuGCuUCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 29526 0.68 0.773589
Target:  5'- aGCaCGGcGGUCUUCGCGcGGCGGC-CGu -3'
miRNA:   3'- gCG-GCU-CUAGGAGUGCuUCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 124821 0.66 0.867083
Target:  5'- gCGCCGguuccAGuUCCUCAacuucauGCGGCUCGu -3'
miRNA:   3'- -GCGGC-----UCuAGGAGUgcuu---CGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 99190 0.66 0.84374
Target:  5'- gCGUCGAGAUCCgCGcCGGAGaCGcGUUCu -3'
miRNA:   3'- -GCGGCUCUAGGaGU-GCUUC-GC-CGAGu -5'
25676 5' -56.7 NC_005337.1 + 53650 0.66 0.84374
Target:  5'- gCGCCGuGAUCgC-CGCGAugcagcgcgucGGCGGCcgCAa -3'
miRNA:   3'- -GCGGCuCUAG-GaGUGCU-----------UCGCCGa-GU- -5'
25676 5' -56.7 NC_005337.1 + 17989 0.66 0.84374
Target:  5'- aGCCGAGGuacUCCUCgaucaccgGCGGAGCcauGGCa-- -3'
miRNA:   3'- gCGGCUCU---AGGAG--------UGCUUCG---CCGagu -5'
25676 5' -56.7 NC_005337.1 + 36816 0.66 0.84293
Target:  5'- uCGCCGguuuccugauuccGGAggcuaucugCUUUACGAAGUGGUUCAu -3'
miRNA:   3'- -GCGGC-------------UCUa--------GGAGUGCUUCGCCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 42447 0.67 0.827203
Target:  5'- gGCCGAGuacggggagUUCGCGAAGCGGUa-- -3'
miRNA:   3'- gCGGCUCuag------GAGUGCUUCGCCGagu -5'
25676 5' -56.7 NC_005337.1 + 28982 0.67 0.827203
Target:  5'- gGCCGAGAggUUCGCGAAGaUGaGCUUc -3'
miRNA:   3'- gCGGCUCUagGAGUGCUUC-GC-CGAGu -5'
25676 5' -56.7 NC_005337.1 + 5901 0.67 0.827203
Target:  5'- aCGCgGAGcgCgUCgcagGCGAAGUGGUUCu -3'
miRNA:   3'- -GCGgCUCuaGgAG----UGCUUCGCCGAGu -5'
25676 5' -56.7 NC_005337.1 + 24737 0.67 0.827203
Target:  5'- uGCUGaAGAUCCUCGCGcuGCaGCa-- -3'
miRNA:   3'- gCGGC-UCUAGGAGUGCuuCGcCGagu -5'
25676 5' -56.7 NC_005337.1 + 133130 0.67 0.818664
Target:  5'- aGCUGuGAUCCcCGCGGAGCuGgUCGc -3'
miRNA:   3'- gCGGCuCUAGGaGUGCUUCGcCgAGU- -5'
25676 5' -56.7 NC_005337.1 + 86165 0.67 0.818664
Target:  5'- gGaCC-AGGUCUUCACGAAGC-GCUCc -3'
miRNA:   3'- gC-GGcUCUAGGAGUGCUUCGcCGAGu -5'
25676 5' -56.7 NC_005337.1 + 102792 0.67 0.809956
Target:  5'- aCGCCGGGuucaaccacgCCuUCGCGgcGCuGCUCAg -3'
miRNA:   3'- -GCGGCUCua--------GG-AGUGCuuCGcCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 74987 0.67 0.809956
Target:  5'- gGCCGGGucgaCCacguaCACGAGGCGGC-CGc -3'
miRNA:   3'- gCGGCUCua--GGa----GUGCUUCGCCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 44455 0.67 0.809956
Target:  5'- aCGUCGAGcgCCUCGCcGAGCuggaGGC-CAg -3'
miRNA:   3'- -GCGGCUCuaGGAGUGcUUCG----CCGaGU- -5'
25676 5' -56.7 NC_005337.1 + 101546 0.67 0.809076
Target:  5'- cCGCCGccagcguGGAcuUCCUCAaGGAGCuGCUCGu -3'
miRNA:   3'- -GCGGC-------UCU--AGGAGUgCUUCGcCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 39944 0.67 0.801085
Target:  5'- gCGgCGGGcgCCUCGCGcGGGC-GCUCGa -3'
miRNA:   3'- -GCgGCUCuaGGAGUGC-UUCGcCGAGU- -5'
25676 5' -56.7 NC_005337.1 + 74900 0.68 0.782893
Target:  5'- aCGCCGGGggCgUgAUGgcGCGGCUg- -3'
miRNA:   3'- -GCGGCUCuaGgAgUGCuuCGCCGAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.