miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25678 3' -50.7 NC_005337.1 + 63827 0.66 0.990008
Target:  5'- uGGUCUAcgagcAGACC-CUGgaGGACGcGCACc -3'
miRNA:   3'- uCCAGGU-----UCUGGuGAU--UCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 72864 0.66 0.990008
Target:  5'- -uGUCCGcGaACCuGCU-GGACGUGCACg -3'
miRNA:   3'- ucCAGGUuC-UGG-UGAuUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 130293 0.66 0.990008
Target:  5'- -cGUCCAAGcGCUGCUcAAGGCcgGUGCg -3'
miRNA:   3'- ucCAGGUUC-UGGUGA-UUCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 105593 0.66 0.990008
Target:  5'- gAGGUCCGGGACUucGCcGAGgucggggccgGCGUGC-Cg -3'
miRNA:   3'- -UCCAGGUUCUGG--UGaUUC----------UGUACGuG- -5'
25678 3' -50.7 NC_005337.1 + 66928 0.66 0.988579
Target:  5'- -cGUCCAugguGGCCACggacccGGACGcGCGCg -3'
miRNA:   3'- ucCAGGUu---CUGGUGau----UCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 127128 0.66 0.988579
Target:  5'- gGGGUCCGAGGcggacaucguCCGCgugcuGAUccGCGCg -3'
miRNA:   3'- -UCCAGGUUCU----------GGUGauu--CUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 43867 0.66 0.988579
Target:  5'- uGGUCac-GGCCACga--ACGUGCGCg -3'
miRNA:   3'- uCCAGguuCUGGUGauucUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 121774 0.66 0.986995
Target:  5'- gAGGUCaucGACCAgCUGcucgauGACAUGCAg -3'
miRNA:   3'- -UCCAGguuCUGGU-GAUu-----CUGUACGUg -5'
25678 3' -50.7 NC_005337.1 + 118874 0.66 0.986995
Target:  5'- uGG-CCAuguacaACCACUucacGGGCGUGCACu -3'
miRNA:   3'- uCCaGGUuc----UGGUGAu---UCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 74144 0.66 0.986995
Target:  5'- -aGUCCAAGgacuacgagcACUACUucucGGACAUGUGCa -3'
miRNA:   3'- ucCAGGUUC----------UGGUGAu---UCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 87736 0.66 0.986995
Target:  5'- gAGGUucaucgucaCCGGGGCCACUGcGGgGUGCc- -3'
miRNA:   3'- -UCCA---------GGUUCUGGUGAUuCUgUACGug -5'
25678 3' -50.7 NC_005337.1 + 121498 0.66 0.986995
Target:  5'- cGGGUUCAc-GCCGCUGc-ACAUGUACa -3'
miRNA:   3'- -UCCAGGUucUGGUGAUucUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 113876 0.66 0.985249
Target:  5'- uGGUCac-GACCACUGcccucucuucACAUGCACg -3'
miRNA:   3'- uCCAGguuCUGGUGAUuc--------UGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 16519 0.66 0.985249
Target:  5'- cGGG-CCAAGACCAacggagagcAGGCGUGUcgGCg -3'
miRNA:   3'- -UCCaGGUUCUGGUgau------UCUGUACG--UG- -5'
25678 3' -50.7 NC_005337.1 + 132379 0.66 0.985249
Target:  5'- gGGGUUCccgGAGGCCGCcGAGugcGCAUaGCGCu -3'
miRNA:   3'- -UCCAGG---UUCUGGUGaUUC---UGUA-CGUG- -5'
25678 3' -50.7 NC_005337.1 + 59519 0.66 0.985249
Target:  5'- cGGUgaCCAGGuCguCgaugAAGGCGUGCACg -3'
miRNA:   3'- uCCA--GGUUCuGguGa---UUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 20038 0.66 0.983328
Target:  5'- -cGUCUGGaACCGCUcgGAGACcgGCGCg -3'
miRNA:   3'- ucCAGGUUcUGGUGA--UUCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 33975 0.66 0.983328
Target:  5'- cGG-CCAGGGCCAggAAGG--UGCGCa -3'
miRNA:   3'- uCCaGGUUCUGGUgaUUCUguACGUG- -5'
25678 3' -50.7 NC_005337.1 + 110452 0.67 0.981224
Target:  5'- cGGg-CAGGACCuCcGAGGCGUGCAg -3'
miRNA:   3'- uCCagGUUCUGGuGaUUCUGUACGUg -5'
25678 3' -50.7 NC_005337.1 + 69385 0.67 0.981224
Target:  5'- cAGGUCCGcc-UCugUGAGGCG-GCACg -3'
miRNA:   3'- -UCCAGGUucuGGugAUUCUGUaCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.