miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25678 3' -50.7 NC_005337.1 + 126410 0.69 0.927499
Target:  5'- cGG-CCAAGGCCGCccGGcgcgcgacggcgcGCGUGCGCg -3'
miRNA:   3'- uCCaGGUUCUGGUGauUC-------------UGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 132786 0.69 0.928058
Target:  5'- gAGGUgacggugcccaCCGAGACCAC-GAGGCAgUGCGu -3'
miRNA:   3'- -UCCA-----------GGUUCUGGUGaUUCUGU-ACGUg -5'
25678 3' -50.7 NC_005337.1 + 57265 0.69 0.928058
Target:  5'- cGGgcaCGGGGCCGCgcgGGGCcgGCGCg -3'
miRNA:   3'- uCCag-GUUCUGGUGau-UCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 69868 0.69 0.928058
Target:  5'- cGGGUCCAGcGACCGCacguuGGACcagaaguUGUACa -3'
miRNA:   3'- -UCCAGGUU-CUGGUGau---UCUGu------ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 78110 0.69 0.930268
Target:  5'- gAGGUCCAGGACUACggcGuCGgccuugccgccccgcUGCACg -3'
miRNA:   3'- -UCCAGGUUCUGGUGauuCuGU---------------ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 97009 0.69 0.933501
Target:  5'- gGGGUCCGcGGACCuggacaaccgcaACUGcGACGUGgACg -3'
miRNA:   3'- -UCCAGGU-UCUGG------------UGAUuCUGUACgUG- -5'
25678 3' -50.7 NC_005337.1 + 9396 0.69 0.933501
Target:  5'- gAGGUCCucgGAGGCCguaggcggcauGCgauccacgAGGACGUGUACg -3'
miRNA:   3'- -UCCAGG---UUCUGG-----------UGa-------UUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 56917 0.69 0.938677
Target:  5'- cGGGaUCCGGGGCUACUucgGGGACA-GCGu -3'
miRNA:   3'- -UCC-AGGUUCUGGUGA---UUCUGUaCGUg -5'
25678 3' -50.7 NC_005337.1 + 128782 0.69 0.943587
Target:  5'- cGGaUUCGGGuCCAC--GGGCGUGCGCa -3'
miRNA:   3'- uCC-AGGUUCuGGUGauUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 17019 0.69 0.948233
Target:  5'- gGGGUCUGcGGGCCGCgcgAAGGC--GCACg -3'
miRNA:   3'- -UCCAGGU-UCUGGUGa--UUCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 36208 0.69 0.948233
Target:  5'- --cUCCGAGACCAC--GGGCAUGaGCg -3'
miRNA:   3'- uccAGGUUCUGGUGauUCUGUACgUG- -5'
25678 3' -50.7 NC_005337.1 + 4313 0.68 0.956746
Target:  5'- cGGuGUUCGAGACCACaGAGGgGUcgGCGCc -3'
miRNA:   3'- -UC-CAGGUUCUGGUGaUUCUgUA--CGUG- -5'
25678 3' -50.7 NC_005337.1 + 31677 0.68 0.956746
Target:  5'- cGGUCCGGGAagaaCACgcaguAGACcaucuUGCGCa -3'
miRNA:   3'- uCCAGGUUCUg---GUGau---UCUGu----ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 3218 0.68 0.956746
Target:  5'- aGGGUcacguccgcacCCAGGGCCAg-GAGGCGcGCGCa -3'
miRNA:   3'- -UCCA-----------GGUUCUGGUgaUUCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 131322 0.68 0.956746
Target:  5'- gAGG-CgGAGACCGCgcu--CAUGCGCg -3'
miRNA:   3'- -UCCaGgUUCUGGUGauucuGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 9315 0.68 0.956746
Target:  5'- gAGGaacaugCCGAGACCGgCgacgcGGGACAUGCGa -3'
miRNA:   3'- -UCCa-----GGUUCUGGU-Ga----UUCUGUACGUg -5'
25678 3' -50.7 NC_005337.1 + 68240 0.68 0.956746
Target:  5'- gGGGcUCCu---CCACgaagAGGACGUGCAUg -3'
miRNA:   3'- -UCC-AGGuucuGGUGa---UUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 15451 0.68 0.960622
Target:  5'- cGGUCCAGGAgaCACUGGcuggccaccGACG-GCGCg -3'
miRNA:   3'- uCCAGGUUCUg-GUGAUU---------CUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 71250 0.68 0.960622
Target:  5'- cGGUCUucGACCGCgucGACAacGCGCu -3'
miRNA:   3'- uCCAGGuuCUGGUGauuCUGUa-CGUG- -5'
25678 3' -50.7 NC_005337.1 + 122010 0.68 0.960622
Target:  5'- gGGGUgCGAcccGGCCGCgacGGACAUGCuCg -3'
miRNA:   3'- -UCCAgGUU---CUGGUGau-UCUGUACGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.