miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25678 3' -50.7 NC_005337.1 + 112507 0.68 0.963899
Target:  5'- cGGcGUCgAAGACCucgcagcGCUGcGACAUGUGCa -3'
miRNA:   3'- -UC-CAGgUUCUGG-------UGAUuCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 68696 0.68 0.963899
Target:  5'- cAGGUCCuguuuggacGACCGCUagcauggccGAGACGcccgugcUGCGCa -3'
miRNA:   3'- -UCCAGGuu-------CUGGUGA---------UUCUGU-------ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 115450 0.68 0.96764
Target:  5'- gGGGuUCCuGGugUcgGCcgGAGACAUGCGCc -3'
miRNA:   3'- -UCC-AGGuUCugG--UGa-UUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 33351 0.68 0.96764
Target:  5'- gGGGUC--GGugCGCacGGugGUGCACa -3'
miRNA:   3'- -UCCAGguUCugGUGauUCugUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 8138 0.67 0.973721
Target:  5'- cGGGgacgCCGGGcaugGCCGCgcgcacGGCGUGCGCg -3'
miRNA:   3'- -UCCa---GGUUC----UGGUGauu---CUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 11266 0.67 0.973721
Target:  5'- -cGUCCAuguuGGCCACcGuuACGUGCGCg -3'
miRNA:   3'- ucCAGGUu---CUGGUGaUucUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 85378 0.67 0.973721
Target:  5'- -cGUCCGAGAUgCACUGgauGcCGUGCGCg -3'
miRNA:   3'- ucCAGGUUCUG-GUGAUu--CuGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 93356 0.67 0.973721
Target:  5'- gAGGUCgAGGACgACUgGGGGCAaGUGCc -3'
miRNA:   3'- -UCCAGgUUCUGgUGA-UUCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 101924 0.67 0.97643
Target:  5'- uGGUCCugGAGACCGuccuGGACGagcUGCGCc -3'
miRNA:   3'- uCCAGG--UUCUGGUgau-UCUGU---ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 113205 0.67 0.97643
Target:  5'- -cGUCCGGGACCACgacuacGGCGaGUACu -3'
miRNA:   3'- ucCAGGUUCUGGUGauu---CUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 105548 0.67 0.97643
Target:  5'- -cGUCCAc--CCGCUGGGGCAggacGCACa -3'
miRNA:   3'- ucCAGGUucuGGUGAUUCUGUa---CGUG- -5'
25678 3' -50.7 NC_005337.1 + 122189 0.67 0.978688
Target:  5'- cGGGUCCAcgcgcgagggcguGGACguCaAGGACAagcugUGCACg -3'
miRNA:   3'- -UCCAGGU-------------UCUGguGaUUCUGU-----ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 99164 0.67 0.978928
Target:  5'- gGGcGUCCGc-GCCGCgcGGACgAUGCGCg -3'
miRNA:   3'- -UC-CAGGUucUGGUGauUCUG-UACGUG- -5'
25678 3' -50.7 NC_005337.1 + 37466 0.67 0.978928
Target:  5'- cAGGUCCGAGAacagacCCACgGGGA---GCACg -3'
miRNA:   3'- -UCCAGGUUCU------GGUGaUUCUguaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 32826 0.67 0.978928
Target:  5'- gAGGUaCGGGACCAUggcGGGCGUGaCAUc -3'
miRNA:   3'- -UCCAgGUUCUGGUGau-UCUGUAC-GUG- -5'
25678 3' -50.7 NC_005337.1 + 110452 0.67 0.981224
Target:  5'- cGGg-CAGGACCuCcGAGGCGUGCAg -3'
miRNA:   3'- uCCagGUUCUGGuGaUUCUGUACGUg -5'
25678 3' -50.7 NC_005337.1 + 28959 0.67 0.981224
Target:  5'- -cGUgCuGGGCaACUGGGGCGUGCGCa -3'
miRNA:   3'- ucCAgGuUCUGgUGAUUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 69385 0.67 0.981224
Target:  5'- cAGGUCCGcc-UCugUGAGGCG-GCACg -3'
miRNA:   3'- -UCCAGGUucuGGugAUUCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 79136 0.67 0.981224
Target:  5'- cGGuGUCCuggaugGAGACCACgccGGACGaggGCACc -3'
miRNA:   3'- -UC-CAGG------UUCUGGUGau-UCUGUa--CGUG- -5'
25678 3' -50.7 NC_005337.1 + 20038 0.66 0.983328
Target:  5'- -cGUCUGGaACCGCUcgGAGACcgGCGCg -3'
miRNA:   3'- ucCAGGUUcUGGUGA--UUCUGuaCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.