miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25678 3' -50.7 NC_005337.1 + 1307 0.7 0.922347
Target:  5'- cGGUCac-GACCACcAGGugcACGUGCACg -3'
miRNA:   3'- uCCAGguuCUGGUGaUUC---UGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 3218 0.68 0.956746
Target:  5'- aGGGUcacguccgcacCCAGGGCCAg-GAGGCGcGCGCa -3'
miRNA:   3'- -UCCA-----------GGUUCUGGUgaUUCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 4313 0.68 0.956746
Target:  5'- cGGuGUUCGAGACCACaGAGGgGUcgGCGCc -3'
miRNA:   3'- -UC-CAGGUUCUGGUGaUUCUgUA--CGUG- -5'
25678 3' -50.7 NC_005337.1 + 8138 0.67 0.973721
Target:  5'- cGGGgacgCCGGGcaugGCCGCgcgcacGGCGUGCGCg -3'
miRNA:   3'- -UCCa---GGUUC----UGGUGauu---CUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 8294 0.7 0.903613
Target:  5'- aGGGUUaUAAGAUCACUAacuAGuacGCAUGCACg -3'
miRNA:   3'- -UCCAG-GUUCUGGUGAU---UC---UGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 9315 0.68 0.956746
Target:  5'- gAGGaacaugCCGAGACCGgCgacgcGGGACAUGCGa -3'
miRNA:   3'- -UCCa-----GGUUCUGGU-Ga----UUCUGUACGUg -5'
25678 3' -50.7 NC_005337.1 + 9360 0.72 0.80657
Target:  5'- gGGGUCCAGGGgCA--GGGGCAUGCugGCg -3'
miRNA:   3'- -UCCAGGUUCUgGUgaUUCUGUACG--UG- -5'
25678 3' -50.7 NC_005337.1 + 9396 0.69 0.933501
Target:  5'- gAGGUCCucgGAGGCCguaggcggcauGCgauccacgAGGACGUGUACg -3'
miRNA:   3'- -UCCAGG---UUCUGG-----------UGa-------UUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 10720 0.74 0.746568
Target:  5'- -cGUCCAcGGCCAUguggucagggcggUGGGACGUGCACu -3'
miRNA:   3'- ucCAGGUuCUGGUG-------------AUUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 11266 0.67 0.973721
Target:  5'- -cGUCCAuguuGGCCACcGuuACGUGCGCg -3'
miRNA:   3'- ucCAGGUu---CUGGUGaUucUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 15451 0.68 0.960622
Target:  5'- cGGUCCAGGAgaCACUGGcuggccaccGACG-GCGCg -3'
miRNA:   3'- uCCAGGUUCUg-GUGAUU---------CUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 16519 0.66 0.985249
Target:  5'- cGGG-CCAAGACCAacggagagcAGGCGUGUcgGCg -3'
miRNA:   3'- -UCCaGGUUCUGGUgau------UCUGUACG--UG- -5'
25678 3' -50.7 NC_005337.1 + 16903 0.71 0.867214
Target:  5'- gAGGUCCAGGAUCuucuGGACcaGCACg -3'
miRNA:   3'- -UCCAGGUUCUGGugauUCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 17019 0.69 0.948233
Target:  5'- gGGGUCUGcGGGCCGCgcgAAGGC--GCACg -3'
miRNA:   3'- -UCCAGGU-UCUGGUGa--UUCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 20038 0.66 0.983328
Target:  5'- -cGUCUGGaACCGCUcgGAGACcgGCGCg -3'
miRNA:   3'- ucCAGGUUcUGGUGA--UUCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 28959 0.67 0.981224
Target:  5'- -cGUgCuGGGCaACUGGGGCGUGCGCa -3'
miRNA:   3'- ucCAgGuUCUGgUGAUUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 31677 0.68 0.956746
Target:  5'- cGGUCCGGGAagaaCACgcaguAGACcaucuUGCGCa -3'
miRNA:   3'- uCCAGGUUCUg---GUGau---UCUGu----ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 32826 0.67 0.978928
Target:  5'- gAGGUaCGGGACCAUggcGGGCGUGaCAUc -3'
miRNA:   3'- -UCCAgGUUCUGGUGau-UCUGUAC-GUG- -5'
25678 3' -50.7 NC_005337.1 + 33351 0.68 0.96764
Target:  5'- gGGGUC--GGugCGCacGGugGUGCACa -3'
miRNA:   3'- -UCCAGguUCugGUGauUCugUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 33975 0.66 0.983328
Target:  5'- cGG-CCAGGGCCAggAAGG--UGCGCa -3'
miRNA:   3'- uCCaGGUUCUGGUgaUUCUguACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.