miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25678 3' -50.7 NC_005337.1 + 76748 0.75 0.695224
Target:  5'- cGGUCCAGGcCCAggAAGACGcGCGCc -3'
miRNA:   3'- uCCAGGUUCuGGUgaUUCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 78110 0.69 0.930268
Target:  5'- gAGGUCCAGGACUACggcGuCGgccuugccgccccgcUGCACg -3'
miRNA:   3'- -UCCAGGUUCUGGUGauuCuGU---------------ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 79136 0.67 0.981224
Target:  5'- cGGuGUCCuggaugGAGACCACgccGGACGaggGCACc -3'
miRNA:   3'- -UC-CAGG------UUCUGGUGau-UCUGUa--CGUG- -5'
25678 3' -50.7 NC_005337.1 + 85378 0.67 0.973721
Target:  5'- -cGUCCGAGAUgCACUGgauGcCGUGCGCg -3'
miRNA:   3'- ucCAGGUUCUG-GUGAUu--CuGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 87736 0.66 0.986995
Target:  5'- gAGGUucaucgucaCCGGGGCCACUGcGGgGUGCc- -3'
miRNA:   3'- -UCCA---------GGUUCUGGUGAUuCUgUACGug -5'
25678 3' -50.7 NC_005337.1 + 93356 0.67 0.973721
Target:  5'- gAGGUCgAGGACgACUgGGGGCAaGUGCc -3'
miRNA:   3'- -UCCAGgUUCUGgUGA-UUCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 97009 0.69 0.933501
Target:  5'- gGGGUCCGcGGACCuggacaaccgcaACUGcGACGUGgACg -3'
miRNA:   3'- -UCCAGGU-UCUGG------------UGAUuCUGUACgUG- -5'
25678 3' -50.7 NC_005337.1 + 97661 0.71 0.867214
Target:  5'- cGGUCgCGcgcgcgcuccAGGCCGC--GGGCGUGCACg -3'
miRNA:   3'- uCCAG-GU----------UCUGGUGauUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 99164 0.67 0.978928
Target:  5'- gGGcGUCCGc-GCCGCgcGGACgAUGCGCg -3'
miRNA:   3'- -UC-CAGGUucUGGUGauUCUG-UACGUG- -5'
25678 3' -50.7 NC_005337.1 + 101924 0.67 0.97643
Target:  5'- uGGUCCugGAGACCGuccuGGACGagcUGCGCc -3'
miRNA:   3'- uCCAGG--UUCUGGUgau-UCUGU---ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 102148 0.72 0.842489
Target:  5'- gAGGUgUAcguGGACaCGCU-GGACAUGCGCg -3'
miRNA:   3'- -UCCAgGU---UCUG-GUGAuUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 103290 0.74 0.747592
Target:  5'- uGGUCCGcGACCGCaUGAacGAgGUGCGCa -3'
miRNA:   3'- uCCAGGUuCUGGUG-AUU--CUgUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 105199 0.77 0.576562
Target:  5'- gGGGUCCGcggccuggGGGCCGCUGAG-C-UGCGCg -3'
miRNA:   3'- -UCCAGGU--------UCUGGUGAUUCuGuACGUG- -5'
25678 3' -50.7 NC_005337.1 + 105548 0.67 0.97643
Target:  5'- -cGUCCAc--CCGCUGGGGCAggacGCACa -3'
miRNA:   3'- ucCAGGUucuGGUGAUUCUGUa---CGUG- -5'
25678 3' -50.7 NC_005337.1 + 105593 0.66 0.990008
Target:  5'- gAGGUCCGGGACUucGCcGAGgucggggccgGCGUGC-Cg -3'
miRNA:   3'- -UCCAGGUUCUGG--UGaUUC----------UGUACGuG- -5'
25678 3' -50.7 NC_005337.1 + 107296 0.77 0.5873
Target:  5'- cGGGUCCGAGACCgugaACUucuGCGUGUACg -3'
miRNA:   3'- -UCCAGGUUCUGG----UGAuucUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 110452 0.67 0.981224
Target:  5'- cGGg-CAGGACCuCcGAGGCGUGCAg -3'
miRNA:   3'- uCCagGUUCUGGuGaUUCUGUACGUg -5'
25678 3' -50.7 NC_005337.1 + 112507 0.68 0.963899
Target:  5'- cGGcGUCgAAGACCucgcagcGCUGcGACAUGUGCa -3'
miRNA:   3'- -UC-CAGgUUCUGG-------UGAUuCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 113205 0.67 0.97643
Target:  5'- -cGUCCGGGACCACgacuacGGCGaGUACu -3'
miRNA:   3'- ucCAGGUUCUGGUGauu---CUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 113691 0.7 0.922347
Target:  5'- cGGGUCCGacccugAGcCCAUgGAGACGgagUGCACg -3'
miRNA:   3'- -UCCAGGU------UCuGGUGaUUCUGU---ACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.