miRNA display CGI


Results 61 - 77 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25678 3' -50.7 NC_005337.1 + 113876 0.66 0.985249
Target:  5'- uGGUCac-GACCACUGcccucucuucACAUGCACg -3'
miRNA:   3'- uCCAGguuCUGGUGAUuc--------UGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 115450 0.68 0.96764
Target:  5'- gGGGuUCCuGGugUcgGCcgGAGACAUGCGCc -3'
miRNA:   3'- -UCC-AGGuUCugG--UGa-UUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 115715 0.73 0.797123
Target:  5'- aAGGUCguGGACCACaucUucGACGUcGCACg -3'
miRNA:   3'- -UCCAGguUCUGGUG---AuuCUGUA-CGUG- -5'
25678 3' -50.7 NC_005337.1 + 117348 0.72 0.81584
Target:  5'- cGG-CCAAcgucGGCCGCguGGACGUGCGCa -3'
miRNA:   3'- uCCaGGUU----CUGGUGauUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 118874 0.66 0.986995
Target:  5'- uGG-CCAuguacaACCACUucacGGGCGUGCACu -3'
miRNA:   3'- uCCaGGUuc----UGGUGAu---UCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 121498 0.66 0.986995
Target:  5'- cGGGUUCAc-GCCGCUGc-ACAUGUACa -3'
miRNA:   3'- -UCCAGGUucUGGUGAUucUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 121774 0.66 0.986995
Target:  5'- gAGGUCaucGACCAgCUGcucgauGACAUGCAg -3'
miRNA:   3'- -UCCAGguuCUGGU-GAUu-----CUGUACGUg -5'
25678 3' -50.7 NC_005337.1 + 122010 0.68 0.960622
Target:  5'- gGGGUgCGAcccGGCCGCgacGGACAUGCuCg -3'
miRNA:   3'- -UCCAgGUU---CUGGUGau-UCUGUACGuG- -5'
25678 3' -50.7 NC_005337.1 + 122189 0.67 0.978688
Target:  5'- cGGGUCCAcgcgcgagggcguGGACguCaAGGACAagcugUGCACg -3'
miRNA:   3'- -UCCAGGU-------------UCUGguGaUUCUGU-----ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 125083 0.7 0.910123
Target:  5'- uGGGUCCGcGACCGCgu-GGCcaaGCACc -3'
miRNA:   3'- -UCCAGGUuCUGGUGauuCUGua-CGUG- -5'
25678 3' -50.7 NC_005337.1 + 126410 0.69 0.927499
Target:  5'- cGG-CCAAGGCCGCccGGcgcgcgacggcgcGCGUGCGCg -3'
miRNA:   3'- uCCaGGUUCUGGUGauUC-------------UGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 127128 0.66 0.988579
Target:  5'- gGGGUCCGAGGcggacaucguCCGCgugcuGAUccGCGCg -3'
miRNA:   3'- -UCCAGGUUCU----------GGUGauu--CUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 128782 0.69 0.943587
Target:  5'- cGGaUUCGGGuCCAC--GGGCGUGCGCa -3'
miRNA:   3'- uCC-AGGUUCuGGUGauUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 130293 0.66 0.990008
Target:  5'- -cGUCCAAGcGCUGCUcAAGGCcgGUGCg -3'
miRNA:   3'- ucCAGGUUC-UGGUGA-UUCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 131322 0.68 0.956746
Target:  5'- gAGG-CgGAGACCGCgcu--CAUGCGCg -3'
miRNA:   3'- -UCCaGgUUCUGGUGauucuGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 132379 0.66 0.985249
Target:  5'- gGGGUUCccgGAGGCCGCcGAGugcGCAUaGCGCu -3'
miRNA:   3'- -UCCAGG---UUCUGGUGaUUC---UGUA-CGUG- -5'
25678 3' -50.7 NC_005337.1 + 132786 0.69 0.928058
Target:  5'- gAGGUgacggugcccaCCGAGACCAC-GAGGCAgUGCGu -3'
miRNA:   3'- -UCCA-----------GGUUCUGGUGaUUCUGU-ACGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.