miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25678 3' -50.7 NC_005337.1 + 69868 0.69 0.928058
Target:  5'- cGGGUCCAGcGACCGCacguuGGACcagaaguUGUACa -3'
miRNA:   3'- -UCCAGGUU-CUGGUGau---UCUGu------ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 69385 0.67 0.981224
Target:  5'- cAGGUCCGcc-UCugUGAGGCG-GCACg -3'
miRNA:   3'- -UCCAGGUucuGGugAUUCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 68696 0.68 0.963899
Target:  5'- cAGGUCCuguuuggacGACCGCUagcauggccGAGACGcccgugcUGCGCa -3'
miRNA:   3'- -UCCAGGuu-------CUGGUGA---------UUCUGU-------ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 68240 0.68 0.956746
Target:  5'- gGGGcUCCu---CCACgaagAGGACGUGCAUg -3'
miRNA:   3'- -UCC-AGGuucuGGUGa---UUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 66928 0.66 0.988579
Target:  5'- -cGUCCAugguGGCCACggacccGGACGcGCGCg -3'
miRNA:   3'- ucCAGGUu---CUGGUGau----UCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 63827 0.66 0.990008
Target:  5'- uGGUCUAcgagcAGACC-CUGgaGGACGcGCACc -3'
miRNA:   3'- uCCAGGU-----UCUGGuGAU--UCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 59519 0.66 0.985249
Target:  5'- cGGUgaCCAGGuCguCgaugAAGGCGUGCACg -3'
miRNA:   3'- uCCA--GGUUCuGguGa---UUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 57265 0.69 0.928058
Target:  5'- cGGgcaCGGGGCCGCgcgGGGCcgGCGCg -3'
miRNA:   3'- uCCag-GUUCUGGUGau-UCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 56917 0.69 0.938677
Target:  5'- cGGGaUCCGGGGCUACUucgGGGACA-GCGu -3'
miRNA:   3'- -UCC-AGGUUCUGGUGA---UUCUGUaCGUg -5'
25678 3' -50.7 NC_005337.1 + 46335 0.8 0.433884
Target:  5'- gAGGUCCGGGcuGCCGCc--GGCGUGCACg -3'
miRNA:   3'- -UCCAGGUUC--UGGUGauuCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 45612 0.74 0.726909
Target:  5'- -cGcCCGAcGACCGCUGGGAUAUGCAg -3'
miRNA:   3'- ucCaGGUU-CUGGUGAUUCUGUACGUg -5'
25678 3' -50.7 NC_005337.1 + 43867 0.66 0.988579
Target:  5'- uGGUCac-GGCCACga--ACGUGCGCg -3'
miRNA:   3'- uCCAGguuCUGGUGauucUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 41653 0.75 0.652197
Target:  5'- uGGaUCGGGAUCGCUGAGACGcGCGCg -3'
miRNA:   3'- uCCaGGUUCUGGUGAUUCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 40875 1.11 0.005096
Target:  5'- cAGGUCCAAGACCACUAAGACAUGCACa -3'
miRNA:   3'- -UCCAGGUUCUGGUGAUUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 40795 0.79 0.462873
Target:  5'- gAGGUCCAcgGGACCAUgggcGACGUGUGCg -3'
miRNA:   3'- -UCCAGGU--UCUGGUGauu-CUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 37466 0.67 0.978928
Target:  5'- cAGGUCCGAGAacagacCCACgGGGA---GCACg -3'
miRNA:   3'- -UCCAGGUUCU------GGUGaUUCUguaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 36208 0.69 0.948233
Target:  5'- --cUCCGAGACCAC--GGGCAUGaGCg -3'
miRNA:   3'- uccAGGUUCUGGUGauUCUGUACgUG- -5'
25678 3' -50.7 NC_005337.1 + 33975 0.66 0.983328
Target:  5'- cGG-CCAGGGCCAggAAGG--UGCGCa -3'
miRNA:   3'- uCCaGGUUCUGGUgaUUCUguACGUG- -5'
25678 3' -50.7 NC_005337.1 + 33351 0.68 0.96764
Target:  5'- gGGGUC--GGugCGCacGGugGUGCACa -3'
miRNA:   3'- -UCCAGguUCugGUGauUCugUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 32826 0.67 0.978928
Target:  5'- gAGGUaCGGGACCAUggcGGGCGUGaCAUc -3'
miRNA:   3'- -UCCAgGUUCUGGUGau-UCUGUAC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.