miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25678 3' -50.7 NC_005337.1 + 105548 0.67 0.97643
Target:  5'- -cGUCCAc--CCGCUGGGGCAggacGCACa -3'
miRNA:   3'- ucCAGGUucuGGUGAUUCUGUa---CGUG- -5'
25678 3' -50.7 NC_005337.1 + 3218 0.68 0.956746
Target:  5'- aGGGUcacguccgcacCCAGGGCCAg-GAGGCGcGCGCa -3'
miRNA:   3'- -UCCA-----------GGUUCUGGUgaUUCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 15451 0.68 0.960622
Target:  5'- cGGUCCAGGAgaCACUGGcuggccaccGACG-GCGCg -3'
miRNA:   3'- uCCAGGUUCUg-GUGAUU---------CUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 71250 0.68 0.960622
Target:  5'- cGGUCUucGACCGCgucGACAacGCGCu -3'
miRNA:   3'- uCCAGGuuCUGGUGauuCUGUa-CGUG- -5'
25678 3' -50.7 NC_005337.1 + 122010 0.68 0.960622
Target:  5'- gGGGUgCGAcccGGCCGCgacGGACAUGCuCg -3'
miRNA:   3'- -UCCAgGUU---CUGGUGau-UCUGUACGuG- -5'
25678 3' -50.7 NC_005337.1 + 68696 0.68 0.963899
Target:  5'- cAGGUCCuguuuggacGACCGCUagcauggccGAGACGcccgugcUGCGCa -3'
miRNA:   3'- -UCCAGGuu-------CUGGUGA---------UUCUGU-------ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 11266 0.67 0.973721
Target:  5'- -cGUCCAuguuGGCCACcGuuACGUGCGCg -3'
miRNA:   3'- ucCAGGUu---CUGGUGaUucUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 85378 0.67 0.973721
Target:  5'- -cGUCCGAGAUgCACUGgauGcCGUGCGCg -3'
miRNA:   3'- ucCAGGUUCUG-GUGAUu--CuGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 93356 0.67 0.973721
Target:  5'- gAGGUCgAGGACgACUgGGGGCAaGUGCc -3'
miRNA:   3'- -UCCAGgUUCUGgUGA-UUCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 36208 0.69 0.948233
Target:  5'- --cUCCGAGACCAC--GGGCAUGaGCg -3'
miRNA:   3'- uccAGGUUCUGGUGauUCUGUACgUG- -5'
25678 3' -50.7 NC_005337.1 + 17019 0.69 0.948233
Target:  5'- gGGGUCUGcGGGCCGCgcgAAGGC--GCACg -3'
miRNA:   3'- -UCCAGGU-UCUGGUGa--UUCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 78110 0.69 0.930268
Target:  5'- gAGGUCCAGGACUACggcGuCGgccuugccgccccgcUGCACg -3'
miRNA:   3'- -UCCAGGUUCUGGUGauuCuGU---------------ACGUG- -5'
25678 3' -50.7 NC_005337.1 + 76748 0.75 0.695224
Target:  5'- cGGUCCAGGcCCAggAAGACGcGCGCc -3'
miRNA:   3'- uCCAGGUUCuGGUgaUUCUGUaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 45612 0.74 0.726909
Target:  5'- -cGcCCGAcGACCGCUGGGAUAUGCAg -3'
miRNA:   3'- ucCaGGUU-CUGGUGAUUCUGUACGUg -5'
25678 3' -50.7 NC_005337.1 + 103290 0.74 0.747592
Target:  5'- uGGUCCGcGACCGCaUGAacGAgGUGCGCa -3'
miRNA:   3'- uCCAGGUuCUGGUG-AUU--CUgUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 9360 0.72 0.80657
Target:  5'- gGGGUCCAGGGgCA--GGGGCAUGCugGCg -3'
miRNA:   3'- -UCCAGGUUCUgGUgaUUCUGUACG--UG- -5'
25678 3' -50.7 NC_005337.1 + 117348 0.72 0.81584
Target:  5'- cGG-CCAAcgucGGCCGCguGGACGUGCGCa -3'
miRNA:   3'- uCCaGGUU----CUGGUGauUCUGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 16903 0.71 0.867214
Target:  5'- gAGGUCCAGGAUCuucuGGACcaGCACg -3'
miRNA:   3'- -UCCAGGUUCUGGugauUCUGuaCGUG- -5'
25678 3' -50.7 NC_005337.1 + 8294 0.7 0.903613
Target:  5'- aGGGUUaUAAGAUCACUAacuAGuacGCAUGCACg -3'
miRNA:   3'- -UCCAG-GUUCUGGUGAU---UC---UGUACGUG- -5'
25678 3' -50.7 NC_005337.1 + 126410 0.69 0.927499
Target:  5'- cGG-CCAAGGCCGCccGGcgcgcgacggcgcGCGUGCGCg -3'
miRNA:   3'- uCCaGGUUCUGGUGauUC-------------UGUACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.